Array 1 31395-30646 **** Predicted by CRISPRDetect 2.4 *** >NZ_QETA01000002.1 Corticimicrobacter populi strain 3d-2-2 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31394 28 100.0 32 ............................ CGGCTCAGGCGCAGTTGCAGATATTGTTTGAC 31334 28 100.0 32 ............................ TATGCTCTATGACAGCCTGGACGCGTTAGACG 31274 28 100.0 32 ............................ GCGACCGGTCGGACGCTTGGCAGTCGTATATC 31214 28 100.0 32 ............................ TTCGATGTATTCATCCACGGCTTTGTTGATTG 31154 28 100.0 32 ............................ GCTGAGAATGAGGGTCTAGACGCCAATGCAGT 31094 28 100.0 32 ............................ GTCTGGGCGTCTGTAGCCGACAATGTGGCTCT 31034 28 100.0 32 ............................ CAATGGCATCCATGAAATCGTTGAACGGCGGC 30974 28 100.0 32 ............................ TGCTCGTAGGTGGCCTGACTGCCGGCGACACC 30914 28 100.0 32 ............................ AAGTGAAAAGACTGATCACGACCGCACGCTGC 30854 28 100.0 32 ............................ AAGTCGGGATCACAACAGATCCGATAGGCATA 30794 28 100.0 32 ............................ ACCTTGCTGCCATTGGTGTGAATCGGGCAGCT 30734 28 96.4 32 ....................T....... TGCTCGCGGCGAAAGTCCCTGACTCATAGGCA 30674 28 100.0 0 ............................ | T [30648] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GCACGACTGCAGCACTTGATGCAGGAGAACTGGCTGACAGGCATGGCCGACCATATCGATGCAGCAGGCATTCTGCCAATACCGGCGGGTGTGCAGCATCGGATTGTGCAACGTGTGCAGGTACACAGCAGTGCCGAACGCATCCGCCGACGCCAGATGAAACGCCATGGATTGACGGCAGAAGAGGCACGCCAGCGCATCCCCGATACGGTAGAGCAGCGTTTGGATCTGCCCTGGCTCACCTTGCGCAGCCAAAGCACTGGACAGCACTTTCGGCTATTCGTCGAGCACTTGCCCTGCCAGACAACAGCCGTGTCAGGCAGCTTCAATGCCTACGGCCTGAGCAACGTGGCCACTGTTCCCTGGTTCTGACCCTTTTCTGGAGGGTTTTCCCAGCCTCTTTAAAAACAAAGACTTACGAAACCCTTTCAAAAAAGGGTTTCGACTACTTTTTTGTCGTAAAGCCAATGGCCTGGGGCTTTGCAGAGGTTCGGGGTCTA # Right flank : CCGGGATAAGCCGAGTGCAACTGGCCACCACGTCACTGGCAGTATGATCTATCTCCTCGCTCATCGCCTCCATTGTCGTTCATGCCTTCCCAGAATCATCCCCTCTCTTTCCCAAAAATATCGCACCAAGGTTTTGTCTACGAGGCCGATATAGACCAGCCCGCCCACATCGGCGCAGCAACCATCGGGCAGGTCATTACGCAAGAGAATGCCCCGCCCTACATCGTCGTAGACCACCATATTGACAATGTATTGCCCACTCGCTGGCCCGGTCGCCTGTGGCATGTCCGGATACTGGCGGTCGCCCGGGATCAGCCGGCTTCCTACGCAAATTACACGAGGGCAACCTCCATAGAGGTGTGCGAAGCACTCTCTCCTGCACTGCTGTTCGGGCCACAGGGAGACGCCGTGGGCAAGGTCCAGGACCTCATCCCCCACCTGACCCTTGCCCAGATCGAACATCTCGCCCAGCATGCCACACCGGCAGCAGAAGCCGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44416-43788 **** Predicted by CRISPRDetect 2.4 *** >NZ_QETA01000002.1 Corticimicrobacter populi strain 3d-2-2 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44415 28 100.0 32 ............................ TCGGGCAACTGGTTGCGGATGTCGCGCAGCAG 44355 28 100.0 32 ............................ CTCTTCCCAATCCAAAGGCTCCGAGACGTGCA 44295 28 100.0 32 ............................ TGTCGGCTGTCTCAACGCATGAGCACTGGCAT 44235 28 100.0 32 ............................ AGTCAATGATCTCGGCTGCCGTTTTCCAGGGC 44175 28 100.0 32 ............................ ACCAGCTGGATGGCAATGGCGGGCTGACAACA 44115 28 100.0 32 ............................ GCCAGTCGCCTTAAGGCCTAGCTCAATGCCAG 44055 28 100.0 32 ............................ ATGGCCAGCAGACTTGAGCGCGGCCATCACCT 43995 28 100.0 32 ............................ AGCGCCAGCGGTGGCATGTCGCCCAGGATTTC 43935 28 96.4 32 ................A........... AATTGCTGGTGCAGATCCTCAGCGGTCTTGTC 43875 28 100.0 32 ............................ GCATCGAGGTCAGCGACGACCTACTTCATTCG 43815 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.3 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGACCGCCTATGAACTGCTGCACGATCTGTACGACAACGAAGTGCGCTACACCGAAGAACTGTATGACGGCGTCGGACTGACCGAGGACGTCAAGCGATTCCTGCACTACAACACCAACAAGGCGCTGATGAACCTCGGCTACGAGGCCTTGTTCCCCGCCAGCGTGACCAACGTGAATCCCGCCATCCTGGCTGCGCTGTCGCCGGGGGCAGATGAAAATCACGATTTTTTCTCGGGCTCCGGCTCATCTTATGTCATCGGCAAGGCCGTGGCGACCGAAGACGACGACTGGGCGTTTTGAAGCCAATAGCAGGAAAAGGGGTTGTGCTTGTCTTGTTGACGTGCAGTACAGGAACCGCCCCTGTACTCGACCCTTTTTTTGACTGCCAGAAAAAACCCTTATAAAACAATGCCCCACAAAGTAGAGCAAAAAAAGGGGTTGAAGGCTGTTTTCGTTAAAATGGATTGAATATCAGGCTGTTGTGAATTTTTTCTTGTA # Right flank : GGCGTCGTTCGTCATGGTGATAACGCGGTACTGTTCAGAGCCGTATACAGTATTTGAAAAAATGCTCGGACGCGGCAACCCGCCAGACGACTGAAACGCATTGGTACGATCAAATCTGTGTCAGCGCCACGCCTCCTAGCAAGCGCTCTGTCACCGTCCGCCGCACAGCCGGCGGCGCGTCGTGCAACAACACAGGCCATTCGGACTGGGCCTGCCTGACCAGCCCCTTGGCCAGCCTGATGTGATTCGGCACACGGGAGAGCTTGGCCTGTTTCAGCAAAGCCTCCAGTGCATCCCAGTCGAATGCTCGCAATCGGCTGTCAATCGCCCGGTTAACAGCATATTCCGCCGGCTTGACCGACTCAAAGAACGCGCTCACGCACACGGGATCGTAGAGCGGAGACAATACCGGTGAGTGTCCATCGGGATACAGCAACGCCCAGTTCTTGAGATGTGCATCCGTATTGCCCAGCAGGATGAATGCAACAAAGCGATGGATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //