Array 1 23231-24715 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEI01000031.1 Pasteurella multocida strain 2526PM isolate swab isolate 1 contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23231 28 100.0 32 ............................ AATAGTAAATTAAAATTATTGCAATCAACTGA 23291 28 100.0 32 ............................ ACTTCGATAATAAATAAGTTCTCTTTATGAGC 23351 28 100.0 32 ............................ ATTTATTTAGATGATTTTTTGAGGGGCGGAGA 23411 28 100.0 32 ............................ AATAGATGAGCTGTTTGTAACGGAGTTTCAGA 23471 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 23531 28 100.0 32 ............................ GTTCTTTAAAGAATACAAGCTCAACTGTATGA 23591 28 100.0 32 ............................ TTTGAGTAGTAAATATTATGGAATTCATTCAG 23651 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 23711 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 23771 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 23831 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 23891 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 23951 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 24011 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 24071 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 24131 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 24191 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 24251 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 24311 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24371 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24431 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24491 17 57.1 0 .............-.A..---------- - Deletion [24508] 24508 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24568 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24628 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 24688 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 97.9 31 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96218-91267 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEI01000028.1 Pasteurella multocida strain 2526PM isolate swab isolate 1 contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96217 28 100.0 32 ............................ ATTGTGCAGTGACTTATGATACAGCAACAGGA 96157 28 100.0 32 ............................ ACGTCCGCAACCATTTTGTAGATGTCCTGAAC 96097 28 100.0 32 ............................ TATTGACCTCATAGGTTGCTGTATCGTTATTA 96037 28 100.0 33 ............................ AATAGTCATCGTCCACGATTGTCAACTTTTCGT 95976 28 100.0 32 ............................ CATGTTTGTTCCCCAAGTTGTTGTTGTTGTTA 95916 28 100.0 32 ............................ TAAAGCTTTGCCGTACATTAAACAAATGGACG 95856 28 100.0 32 ............................ TTGAGCAGGAAATATTATGGAATTCATTCAGA 95796 28 100.0 32 ............................ GTTGGTGGTCTGAACAAGAGTCACCGTTCCAG 95736 28 100.0 32 ............................ ACAAAGTTTGGCTTTCGTGACCAAATTTTAGA 95676 28 100.0 33 ............................ ATTTATCTTTAAAGCAGAGTAAGCCACCCATTG 95615 28 100.0 32 ............................ TTATCTGGGTTCTTAAGGTGACAAACAGTCAC 95555 28 100.0 32 ............................ TTTCATGATATCATCACCTTGTGGATTAAACG 95495 28 100.0 32 ............................ ACACAGGGAAATAGTCAGGTGTGGTCCACGAT 95435 28 100.0 32 ............................ TTTTAGCCACTCATTTAGTCGACCAACAGGTC 95375 28 100.0 32 ............................ GTACTTAGACGGGCTAGCTAACGAATCTTCCT 95315 28 100.0 32 ............................ GCTTGAACTAGAATACTCATAAGGTGGTCTTT 95255 28 100.0 32 ............................ CTTTTGTGTTCTCCCTAACTCTTTCATGTAAG 95195 28 100.0 32 ............................ TCAGCTGATTCCACTTCGATAATAAATAAGTT 95135 28 100.0 32 ............................ GCGATGAAGACGTGAAAGGTTTACTAGATACT 95075 28 100.0 32 ............................ CCAGTTCGACGTGCTGTGAACTTAGGGTTTCT 95015 28 100.0 32 ............................ TACGTGGAACTAATGAGATTGACAGTCGTAAG 94955 28 100.0 32 ............................ GCAATGTTACTAGCGAATCAGCTTATGGTTAC 94895 28 100.0 32 ............................ ATTGAGATAAGGGGTCGTTAGGCATCACACCT 94835 28 100.0 32 ............................ AACAATGAATGCGTTCTTACGCTGATTCATCT 94775 28 100.0 32 ............................ AGTGACATACTACCCCCTACAACTTCTTCTTC 94715 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 94655 28 100.0 32 ............................ AAATTGTTAAGAACGTTATAAGCGTCTGTTTG 94595 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 94535 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 94475 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 94415 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 94355 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 94295 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 94235 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 94175 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 94115 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 94055 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 93995 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 93935 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 93875 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 93815 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 93755 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 93695 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 93635 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 93575 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 93515 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 93455 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 93395 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 93335 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 93275 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 93215 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 93155 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 93095 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 93034 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92974 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92914 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 92854 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 92794 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 92734 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 92674 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 92614 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 92554 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 92494 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 92433 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 92373 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 92313 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 92253 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 92193 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 92133 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 92073 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 92013 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 91953 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 91893 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 91833 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 91773 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 91713 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 91653 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91593 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91533 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91473 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91413 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91353 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91293 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 83 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //