Array 1 97615-95530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPW010000004.1 Dickeya dianthicola strain DDI_59W contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 97614 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCATCCTTTAGTGGGTA 97547 32 100.0 34 ................................ TGCAGAATCGTAGTAAGTCATGATAGTCACCCCA 97481 32 100.0 33 ................................ ACAGTGTACGGTGATAGGTTGACGGACTGAGTC 97416 32 100.0 36 ................................ TCGTTGTTTAGCGCGGGCTTGTTCTGCCTTAGCACC 97348 32 100.0 35 ................................ ACTGAAAGAGATTCTTGATGCCCGTGCCTGTAAAG 97281 32 100.0 35 ................................ CTGGATAACACGCTTAGGTACACGCATATAGCACC 97214 32 100.0 35 ................................ CTTCTTTTAGTGGGTAATGTATAGTTATCTCAAGC 97147 32 100.0 34 ................................ TTATGTTCAGGACGGATTCGTAAGGCCCAAAGGG 97081 32 100.0 35 ................................ CCCTGCTCGGTGCAGGTCTGCCCCTGCCAGTTGTT 97014 32 100.0 35 ................................ TTCATACCGGTGGTGAATGCCACGTTCGATGATAC 96947 32 100.0 33 ................................ TTTTTGGGAGTGCCTGTAGTCTTTATCTCAAGC 96882 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCATCCTTTAGTGGGTA 96815 32 100.0 34 ................................ TGCAGAATCGTAGTAAGTCATGATAGTCACCCCA 96749 32 100.0 33 ................................ ACAGTGTACGGTGATAGGTTGACGGACTGAGTC 96684 32 100.0 36 ................................ TCGTTGTTTAGCGCGGGCTTGTTCTGCCTTAGCACC 96616 32 100.0 35 ................................ ACTGAAAGAGATTCTTGATGCCCGTGCCTGTAAAG 96549 32 100.0 35 ................................ CTGGATAACACGCTTAGGTACACGCATATAGCACC 96482 32 100.0 35 ................................ CTTCTTTTAGTGGGTAATTTATATTTTTCTCATGT 96415 32 100.0 33 ................................ ACAGTGTACGGTGATAGGTTGACGGACTGAGTC 96350 32 100.0 33 ................................ ACGCTCACCAGTTTGTATCCGTCGTGGTTGACC 96285 32 100.0 33 ................................ CAACATCAGGTAGCAGGTGATTTGTTACTAAAT 96220 32 100.0 31 ................................ TCCATTACCCTGATGGCAACTTATTTCATTT 96157 32 100.0 34 ................................ CACGGTAGTGCAGTGGGTAACAAGGTTAAGAGTG 96091 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCATCCTTTAGTGGGTA 96024 32 100.0 36 ................................ TTGTATGGCTTACCCCGCTTTTTATTCTCCCTANGT 95956 32 100.0 33 ................................ ACGCTCACCAGTTTGTATCCGTCGTGGTTGACT 95891 32 100.0 33 ................................ CAGCCAACTGGCGTCAGGTCAATCGCGTTCTGC 95826 32 100.0 35 ................................ ATTTTTAANNTTTATCTCTCGTTTCGCGGCGTTTC 95759 32 100.0 35 ................................ ANTCATTTTCTTTCTTGTATCGTATGCTTTTTTTC 95692 32 100.0 34 ................................ TCATTTTCTGCCTCGAATCGAATGTCGCTGTTTC 95626 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 95560 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 32 32 99.4 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 853542-852972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPW010000006.1 Dickeya dianthicola strain DDI_59W contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 853541 28 100.0 33 ............................ TTGCCAGTTTCTGTTCCCATTGCGAATGGTGAA 853480 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 853420 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 853360 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 853300 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 853240 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 853180 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 853120 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 853060 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 853000 27 89.3 0 .......................-..CG | GG [852977] ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 862257-863725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPW010000006.1 Dickeya dianthicola strain DDI_59W contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 862257 28 100.0 32 ............................ ATTAACTTTATGAGGTGAAGCATGGGCTACGC 862317 28 100.0 32 ............................ AGAAAGAAAATCACTGCCGAACAGCGTGATAT 862377 28 100.0 32 ............................ GAACGAACGAAGTGAGAGAGGACTGAGAGAGC 862437 28 100.0 32 ............................ TCATTGAGTAAGCCTATCAAGACACTAACCAG 862497 28 100.0 32 ............................ GATCGGGAACATCTGCGTGCGGATAACGTCAT 862557 28 100.0 32 ............................ GATCGGGAACATCTGCGTGCGGATAACGTCAT 862617 28 100.0 32 ............................ AGTCTGAGAGTTTTGCAAAAGAATCACTAGGA 862677 28 100.0 32 ............................ TGGTCGATGGTCGAAAACACCGGATGCAGGTA 862737 28 100.0 32 ............................ TGCGTGTTAACTACTCCGTCGGCACTGGCCCG 862797 28 100.0 32 ............................ GTACATGGCATTTTCCCGAAAGGGCAGAAGGC 862857 28 100.0 32 ............................ ACATTCAGTTGCACCGGCATAGCAGAAGGAAA 862917 28 100.0 32 ............................ AGTCAGGACGGGTTTAAGCCTGCCTATCTGGA 862977 28 100.0 32 ............................ ACATTCAGTTGCACCGGCATAGCAGAAGGAAA 863037 28 100.0 32 ............................ AGAGGCGTGAAGCCTCCAGCCGACGACAAGAA 863097 28 100.0 32 ............................ AACTGGGACAAAGCGGTTGCCGAAAAAAAAAA 863157 28 100.0 32 ............................ ACATTCAGTTGCACCGGCATAGCAGAAGGAAA 863217 28 100.0 32 ............................ AGTCAGGACGGGTTTAAGCCTGCCTATCTGGT 863277 28 100.0 32 ............................ TTGCACGCGCCGGCATCCAGAATTTCGTTCAG 863337 28 100.0 32 ............................ AGAGGCGTGAAGCCTCCAGCCGACGACAAGAA 863397 28 100.0 32 ............................ AACTGGGACAAAGCGGTTGCCGAAAACAAACA 863457 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 863517 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 863577 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 863637 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 863697 27 85.7 0 ....................G..-..CG | AG [863715] ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //