Array 1 2059730-2061383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025836.1 Akkermansia muciniphila strain EB-AMDK-21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2059730 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 2059795 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 2059860 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 2059924 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 2059989 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 2060054 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 2060119 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 2060184 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 2060249 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 2060314 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 2060378 31 100.0 34 ............................... TTCAGCATCAGGGACATTGAAGGCCTTGCGGGCG 2060443 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2060508 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 2060573 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 2060638 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 2060703 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 2060768 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 2060833 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 2060898 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 2060963 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 2061028 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 2061093 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 2061158 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 2061223 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2061288 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2061353 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 26 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2553116-2549534 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025836.1 Akkermansia muciniphila strain EB-AMDK-21 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2553115 33 100.0 33 ................................. GATTGCGTAGGGCCGCATGTACGGCTTAACATA 2553049 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 2552982 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 2552915 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 2552848 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 2552781 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552714 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 2552647 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 2552581 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 2552514 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 2552447 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 2552380 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 2552312 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552245 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 2552178 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 2552110 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 2552045 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 2551977 33 100.0 34 ................................. AGTAGCAGATTGTGAGAGTTTCCGGCTTGTGATA 2551910 33 100.0 34 ................................. AATGTCCCTGATGCTGAATAACTTACGATTGTGT 2551843 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 2551777 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 2551711 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2551644 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 2551577 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 2551510 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 2551443 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 2551376 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 2551310 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 2551243 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 2551176 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 2551109 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 2551042 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 2550975 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 2550908 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 2550841 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 2550774 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 2550707 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 2550640 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 2550572 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 2550506 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 2550439 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 2550371 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 2550304 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 2550237 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 2550170 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 2550102 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 2550035 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 2549969 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 2549902 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 2549835 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 2549768 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2549702 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2549635 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2549612] 2549566 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 54 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //