Array 1 2290-1120 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQM01000105.1 Pectobacterium carotovorum strain BF20 PC_101_s200-s132206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2289 28 100.0 32 ............................ GTACCAGAAACTCATTGAGCGTGTTCTCTAAC 2229 28 100.0 33 ............................ GCACTGTGGAGCATGATCAGCGGGGCGGTATCC 2168 28 100.0 32 ............................ TCAGCAATGGTTTCGCAGTTGTGGCAGTACGC 2108 28 100.0 33 ............................ GCTACGGGCGTTCGCGGCAACTCAACGTCACAA 2047 28 100.0 32 ............................ ACCGATTATTGTTAAATGAGCGCTCTAAGTTT 1987 28 100.0 32 ............................ CGACGCTGAAAAGCTAGGGCTAGAACCCAATA 1927 28 100.0 32 ............................ TCAATCCAGTTACGCGTCATCTCATCTGCGAA 1867 28 100.0 32 ............................ GCTTCCGAGAAGCGGGAACGCAAGTCCGGTTC 1807 28 96.4 32 ...........G................ TCCCCACCCGCCTCATACCACAACACATCATC 1747 28 96.4 32 ...........G................ CGTGGCAGACGATGCAGACCGGTAACCCGTGG 1687 28 96.4 32 ...........G................ AGGCATAAAAGCACCTGACAACCCCAGTCGTC 1627 28 96.4 32 ...........G................ TGTGCATCACGGCTCACAACTGCTGTGGTTTT 1567 28 100.0 32 ............................ ATAAGCAGTAACGGTTGCCGCATCGCAGATTG 1507 28 100.0 32 ............................ TGGTCTTTAAAACGATTGAGCCTATCCATCCA 1447 28 100.0 32 ............................ CAACGCGATCGGATCCCCGAACGCATCACGAA 1387 28 100.0 32 ............................ ACATTCAACCCAATAACGGAAGCCGTTAAAAC 1327 28 96.4 32 ...........G................ GTTTGCAGTGGCGTGTCAGTGCGCTGATCTGT 1267 28 96.4 32 ...........G................ TCGTTCAGTGAATCCATACGCACGTTTCAGAT 1207 28 92.9 32 ...........C.C.............. TGGGTGCGGTTAGAGGACAAAGAACGCGCGCT 1147 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 20 28 97.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTGACAGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAAAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGTTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAGTAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATATTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGGTTTTAAGCGCTATTTTCTGGCTATTATCGATGTAACACTATCGGCAGGTTTTGATGCGTTATCGTCTTTAAATAACGTATTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGGATGGAAAATTGCGGATTTGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTTCCTGTACCGATCCCATC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10863-11550 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQM01000105.1 Pectobacterium carotovorum strain BF20 PC_101_s200-s132206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10863 28 100.0 32 ............................ CAGCGATGTGAGCGCAGAAAGTGGCGATGTGA 10923 28 100.0 32 ............................ TAGGGACTGCTCAGCTCTTAGCATGGCCTGTT 10983 28 100.0 32 ............................ ATTCGACCTTATCGGCCAGCAGGACGTTTTGC 11043 28 100.0 32 ............................ TGGATGATACAGGCGACGACAAAGACGCGTTT 11103 28 96.4 32 ............G............... AAGAACATTGCGAAGGAGCTGCACGCCGCCGA 11163 28 100.0 32 ............................ CACGTCAGCAGCAACCGGGGCAAAGTGCCGAA 11223 28 100.0 32 ............................ TACAGCAATGGCAAGTAGGAAGAGAGCTCTAA 11283 28 100.0 32 ............................ TTCTGATGATACAACACTTCTTTCCGACCTCT 11343 28 100.0 33 ............................ CGCCTGCCGCCTCGTAAGCCTCTTTGCCAACGA 11404 28 92.9 32 ...........C.C.............. TTCATAATGGATCAAGACACACCACGTGCGGC 11464 28 96.4 32 ...........C................ TATGTAGGGTCGTGGATTAAAGCCCTGAAAGA 11524 27 89.3 0 .............C.........-..T. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCGACGCTCGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAACCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGTTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAGGGTTTTTCGAAAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACCTAACC # Right flank : ACTATCGAAATGCGTCGCTGGTGCGACGCATTTTGGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGATTGCCGCCGTGATTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTTAGACTGTTACCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //