Array 1 170707-169418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020405.2 Pasteurella multocida strain FDAARGOS_218 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 170706 28 100.0 32 ............................ ATTCGAGCGGATACCGATTTTTTGATGAAAAT 170646 28 100.0 32 ............................ TTTATATCGGTAGGTAAGTCTGATCGGATATT 170586 28 100.0 32 ............................ ACAATTTGATATGAATGGTAATGTTTATTATT 170526 28 100.0 32 ............................ TTTTAATCGTTCCACAGTTGAAGTTAAGCCTT 170466 28 100.0 32 ............................ AAAAGCAGTGCGCGATTCTTACTATCGTAACG 170406 28 100.0 32 ............................ GTGAGTTCATAAAGGTGTGAATTAAGGGATTT 170346 28 100.0 32 ............................ AATATGTTTAAAAGCGATAGTTTGGCGAGTGA 170286 28 100.0 32 ............................ TTAGACAAAAAGCTGTTGCATTTGAAGCCAAA 170226 28 100.0 32 ............................ ATATATCTGCGTGGGTAAATGTTCCAATAATT 170166 28 100.0 32 ............................ ATTTGAAGATTTTTTGACTTTTTCACCGTCTT 170106 28 100.0 32 ............................ AGAAATACGCCACGTTTTTGATAAAATTTGAG 170046 28 100.0 32 ............................ AAAAGTGATTTGCACGCAGGATTTAGAAGTTG 169986 28 100.0 32 ............................ AAATTATGAAAAATCAATATTTAGCACTAGCT 169926 28 100.0 32 ............................ ATTTTCTACTTAGCTCCCTGTCGTATTCGTCT 169866 28 100.0 32 ............................ AAGGGGCGCACCCCTTGACCCCTTTAAACCGA 169806 28 100.0 32 ............................ ACGAACGACGACATAAGCGCATAGTAAACCCC 169746 28 100.0 32 ............................ AACTTTTGTGCAACTTCAGGCTTTAACTTAAT 169686 28 96.4 33 ....G....................... AAGTTGATAATTCATCCAATGTCATTTGTTCAA 169625 28 100.0 32 ............................ GAAGGTCAATAATCTAAAAGGGTCTATTCAAG 169565 28 100.0 32 ............................ AGTTCGTGAGTGCACTCTCGATGTTGTCGATA 169505 28 100.0 32 ............................ AGATTTGTCTATGAGTTCGACTTCGATAATGA 169445 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACTGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGACGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1190158-1193066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020405.2 Pasteurella multocida strain FDAARGOS_218 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1190158 28 100.0 32 ............................ TTGATACTGCCTAAATCATTTTTCCACGATTT 1190218 28 100.0 32 ............................ TTATGAATTATGGCTACAAACACAAACCACAA 1190278 28 100.0 32 ............................ TTTAACGATTCCATATTTTTTATTAATTTTAA 1190338 28 100.0 32 ............................ ATATTAATGAAATCACTAGTCGTAGTATCATT 1190398 28 100.0 32 ............................ TGTACTCCAAGTCCATTTATTATCTTTAATGT 1190458 28 100.0 32 ............................ AGTTTCGCGATTAGTAAAAGTACTAACTTTTT 1190518 28 100.0 32 ............................ TTGTACCTGCTTATCGAGGCGTGACTTCATTA 1190578 28 100.0 32 ............................ ACTTGTGCTCACAATGACCGTAAATTTCAGCA 1190638 28 100.0 32 ............................ ACATGGGTGCTTTTTGTTTTTGGTAATTATCT 1190698 28 100.0 32 ............................ CGAATCACTGTGCCGAAATTGCACAAAGCGGA 1190758 28 100.0 32 ............................ AAAATGAGAAAACCATTCGTTTTCTGCGAGAA 1190818 28 100.0 32 ............................ TGTCGGCGATACTGCAATTGCGAGTTGTGAAA 1190878 28 100.0 32 ............................ AAAAAACAAATTTTGTCACAAAATGAATATAT 1190938 28 100.0 32 ............................ ACGTTCCAATAAGGTATGTTCTTCTTTCAAAT 1190998 28 100.0 32 ............................ TTCACACCAATTCGGCATACTCTTTCTCCAAT 1191058 28 100.0 32 ............................ GTAGTTTTATTGCTGAACATCGTCATTTTACA 1191118 28 100.0 32 ............................ TGCATTATACATTCCAACAGAAATCCATTTAG 1191178 28 100.0 32 ............................ CGAGCGTGCAGTTGGCGTTAGACGGCAAGCCG 1191238 28 100.0 32 ............................ ACGAGTTTGTGCAATGATTTTAAGCATTGGCG 1191298 28 100.0 32 ............................ AGTTGAAGTATCAGAAATTTTAATAAAGCAAT 1191358 28 100.0 32 ............................ CGTGTAATAAGTTACAAATTCACCGTTTATAA 1191418 28 100.0 32 ............................ TGATGTTAGAGATGGCTATGTAGGTTTTCAAA 1191478 28 100.0 33 ............................ CCAAAAACTATAATTTTCTTCAAATTCCTTATC 1191539 28 100.0 32 ............................ TGGTTCTTTTGGTTGAGTTTTTTATCGGCTAC 1191599 28 100.0 32 ............................ TCAATCTAGCGACAATATGAAATCACGCCATT 1191659 28 100.0 32 ............................ TAACATGCCTCGCACTTATGCAAGAGTTAGTT 1191719 28 100.0 33 ............................ CAACAAAAAGCCAGTCATGGATGCCAAAGCTAT 1191780 28 100.0 32 ............................ TTATAGATTAATGCGTAAATCTCACCATCAAT 1191840 28 100.0 32 ............................ GAAAGCGAAAACGCAAGGCGAAAGCGCGCCAG 1191900 28 100.0 32 ............................ ACATTGTTTTTATCTTGCCACTTTCTTGTTCT 1191960 28 100.0 32 ............................ CGCGTAAAGTGGGATTTTTATTTTGAGAGAAG 1192020 28 100.0 32 ............................ TATACTCACCCATTACTTTTTCAAAATAACGC 1192080 28 100.0 32 ............................ ATTGGAATACGCAGTGTATTCTAACTCTACTG 1192140 28 100.0 32 ............................ TTAATTTGCCGTTTTATCTCAAAATTATGAAA 1192200 28 100.0 32 ............................ ACTATTGAAGCTACCTATGAACATCATCCAGT 1192260 28 100.0 32 ............................ TACAGCGTCATAGTGCTTAACTTTATTTAATT 1192320 28 100.0 32 ............................ TAGTGAACTCAAATCAATCTCACCAGTAATAT 1192380 28 100.0 32 ............................ GTTTTTCCTTATGACAAAAACGGTATTCCACT 1192440 28 100.0 32 ............................ GGTCGTAGCAGAATACGCGGGGACAGCTTACA 1192500 28 100.0 32 ............................ TGTTAATCTACAATCAGTTGTAAAATTATTTT 1192560 28 100.0 32 ............................ GACATTAATGTCGGAGACATCATTTAACAGAT 1192620 28 100.0 32 ............................ ACAGTTCACGCACGCGAATGTTACACAACCGC 1192680 28 100.0 32 ............................ GACAGGCACAATGCACGCATTTTTAGCACAAA 1192740 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 1192800 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 1192860 28 100.0 32 ............................ ACATTTGGTCCAAGGTGGTGATAATTCTTGGC 1192920 28 96.4 32 ............G............... TCCAGAGTGTTACAAAACGGCGGAACAGTTAT 1192980 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 1193040 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGTAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTT # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAGGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //