Array 1 40536-39410 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMK01000185.1 Escherichia coli strain SC374 NODE_16_length_99837_cov_613.247_ID_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40535 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 40474 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 40413 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40352 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40291 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40230 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40169 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40108 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40047 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39986 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39925 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39864 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39803 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39742 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39682 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39621 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39560 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39499 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39438 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57347-56037 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMK01000185.1 Escherichia coli strain SC374 NODE_16_length_99837_cov_613.247_ID_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57346 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 57285 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 57224 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 57163 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 57102 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 57041 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 56980 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 56919 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 56858 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 56797 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 56736 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56675 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56614 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56553 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56492 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56431 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56370 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56309 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56248 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56187 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56126 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56065 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //