Array 1 2945299-2944492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059347.1 Providencia rettgeri strain PROV087 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2945298 28 96.4 32 ...........C................ TTGCTAATCTGGTTTCATTTTAAAATCTGTAT 2945238 28 100.0 32 ............................ TTTCGGCGTGGCAACCACAAATTCGTATCAAT 2945178 28 100.0 32 ............................ ATTACTGATAATACCGCAGCAGCGCAAACCAA 2945118 28 100.0 32 ............................ ACCCTGAAATATCACACTGGTCATCTTCAAAA 2945058 28 100.0 32 ............................ CTGTGGCCCGTAATGGAGTTATATCATAATAG 2944998 28 96.4 30 ..........................T. TATATCAAGACAGAAAATTCCAGTTTGCAA 2944940 28 100.0 32 ............................ TCTAATTGAGGTTTATACGTCTCGGGGCAGTT 2944880 28 100.0 32 ............................ CAAGCGGTTACAGCGCTTGAACAGGCGCAGGC 2944820 28 100.0 32 ............................ ATGTAAGATGGTTGCATTGCATAAATTGGTTG 2944760 28 96.4 33 ...........C................ AAGAAGCATTCACTGGCGACTTTCACGTTGTTA 2944699 28 92.9 32 A..........C................ GCAAGACAATGACGTCGTGATTGTGTGGAAAA 2944639 28 96.4 32 ...........C................ TAGCCTTTAACATTGCATCTGCCATGCGGTAG 2944579 28 100.0 32 ............................ ATCACTCATAATCGGTTTGCGTAGCCGTGGTT 2944519 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.2 32 GTTCACCGCCATACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAAACCGTACCTGAACAGCATGTCCAAGTAAGCTATATTCGAAAGCATGTAAAAGGTCAGAGTCGAATTGAAGCCGATATGCAGCAAAAAGCGCGATTATGGTCTGAAAAATCAGGACAACCATTAGAACAGTGCTTAAAGACGTTGTCTGCGAGTAAGCCAAAGGCGGCTAATCGCTTGCCATTTATTTGGGTTGAAAGCTTACATGCCAGAGATAAGCAAGCTGAAAGCCGGTCTTTTCCTTTGTTTATTAAAAGGATAGACGCTACACAAAAGCAAGTTGGGGTGTTTAGTTGCTATGGTCTTAGTCAAACAACTAATGACACAGTTTGTTTAGCAACGGTTCCACATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTGGTTAATAAATCAGTAAGTTATAATCATCAGTAAATAAAAGGGTATTTTTCGATAAATACCCTTAACTGATTGTTATTACTTGTTTTTTGTTTTAAAGTGCATT # Right flank : TTGTGTTGCGATAAAGACAGGAAACTATATTGGAGCTACTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGTTGCTTATGAAGAAGAAATTAGAACTGAAAAATTGCAGGCAATGCTTAAGGCGTGGCGAGAGTCAGCTGGGTTAACAAAAGTTCAAATCGCTGAAATTATAGGGGTTAATCCATCAACTATCACAAGGTTGGAGAGTAATGAGAATAATGCGAGTATTAAAAGCATTGTAAAGTATGCAGCTGCATGTGGTATTAAAAACCCTGTAATCGCCCTTTAAGATAAACTTTATTTACTTTTAATTAGTCATCCCATATTAACTTTTAATCTTTACGTTAAAAACAATTCATCTTAGATTTCTCTCCGTACCGTATTAATTAAGTAGATAGATAACTGTCAATTGACAGCTTAGAAACGAAACAAGTAATGGGTATGATTACCGCCACGTAGGCGGCTTTTTAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCATACAGGCGGCTTAGAAA # Alternate repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2957018-2956870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059347.1 Providencia rettgeri strain PROV087 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2957017 28 100.0 32 ............................ TCAGCTGACGAGTCGGGCAACTACCAGAGCAA 2956957 28 100.0 32 ............................ TCAGCAGTAAAGACAATGCCTTTGGATGCTTT 2956897 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAATATTGAAGCTAAGCAAGGCTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCAATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTTAAAGACTTAAATAGCATGTCACTTTTCGGTAGCCGTTAATTATTTAATATTATTTTTACTCACCGCGCTGTGGAGTGATCCAAGCGCGGTTTTTTTGTTTGGTTTTTTTAGTCACTACTTCAAAGTTTGAGTTCACTATTTGTGTTTTTCATATTGCATAAATTTGCGTTTGTTTTACCCTAATTTGACCTTTTATTTTTACTCTTTAAAAATCCATTGACTAAACAATAAGTTGCAACCAGTACTGAAAATAAAGCTATTTTTCATTTTTTAAAGTTAGCACGTTGTTTTTATTTGTTTTAATCTACAAAAGTTATA # Right flank : GTCAGATGTAGATACCATCTCTAGAAGCGAACTCAAAATTAATGAAGGTTAATTTTGGCTGATATCTTATTTGATTTTTTATACCCCCCAAACAGATTTGAATCAGCTTTTGCGTTGTAGTCCATAATGCTGCTCGAGTCTCAGATTTAAAAAATTCTATTGGTATTGCTAATTGTTCATTGTATTGACTGTATTTTGGCATAAAAAGCGCGGTAGTAATTGGTTGTCCAACTATTGGGGGGCACTTCGCTTTTAAATTTTCCTTAGGGTTTTCTTTTTGTAACAAAGCTAAACTAGATATCTAATTTCACTTGAACATCAATATGTATTTTGAAATAGATGATAATCCACCATAACGGTAGCTTTTTGCTGTTAGATGACTTTACTATTTGATAGTATGAATTCCCTAATGTTTCACAATGGTTAAGTAGTAGCCTATGATTTTTTAAGTACTGATAGAAAAGTGAAAGAGTTAGGCATGCAACTTGAAAGTCGTAGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //