Array 1 12217-11149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPM010000061.1 Lactobacillus crispatus strain LB68 Contig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12216 29 100.0 33 ............................. TTCTCCTTCGGCGCCCTCAGTTCTTGTCACACT 12154 29 96.6 32 ............................C ACAATCTGGAAAGCTGGCGATTCTGCTAAGAC 12093 29 96.6 32 ............................C TAGTGAAGTTCTTCCAACTATCCGCAAGCATG 12032 29 100.0 32 ............................. AAGGCTTGTACCGCCTTAATCTTTTTTTCAGC 11971 29 100.0 32 ............................. GATGAAGAGGAAGCTAAAAAAGCCGTAGAAGG 11910 29 100.0 32 ............................. ATTCAGGGTGGCGCTTAAAATATCCTCGTGCT 11849 29 100.0 32 ............................. AGTTTGGAGCAGAAACAGCGAGATCTTTCTGA 11788 29 96.6 32 ............................C AACAGTGGTTGTCTTAGCATCTGCCATTAAAT 11727 29 100.0 32 ............................. ACAAGGTTTTGCTAATGACATGCGTAGTTGGG 11666 29 96.6 32 ............................C AACGTGATCATCTTTTAAAATTTCATCAATTT 11605 29 100.0 32 ............................. CGTGATTAAGCTGTTCAAGACCGCGATCAATG 11544 29 96.6 32 ............................C AAATTTAACGAAGCCAGAGCCAAAAACATTGA 11483 29 100.0 32 ............................. GACGAGCGCTACGAACACAACTACCCATTCGG 11422 29 100.0 32 ............................. AAATTGCTAAAATCTGCGATAATTTCGTTATC 11361 29 96.6 32 ............................C AAACCAGACGTGATGATCATTAATTCAAAGTT 11300 29 100.0 32 ............................. TATGAACGCAAAGCCTCGTGATAAGCGTCCTA 11239 29 100.0 32 ............................. ATGCAGAGTGGCGTGCATGTCATGATTACAGG 11178 29 86.2 0 .............A...........AA.A | C [11153] ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.1 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TGAACCCTTTGGTTTGAGAGGATAGCTTTTTGCTTTCACCAATTAGTTCACAAACAGTAGAAGTAGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATAAAAACCTCCAAAACTTAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAGTGTCCACATTCTTCGAAGAGACTATTGAAAACTTAAGTAAAACTGCCAGTTTTATATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAATTTCTATTCGTTGAATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16845-14922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPM010000063.1 Lactobacillus crispatus strain LB68 Contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16844 29 96.6 32 ............................C TAATCACAATCAGGCTAAGATTTTAGCCCGAT 16783 29 100.0 32 ............................. GAAGGCTTAATCGGCTACGGCTATCCAGATTA 16722 29 100.0 32 ............................. AGCTCTGTCACTCATTTCTTCAACTTGATACC 16661 29 96.6 32 ............................C AACGTGGACGATTTTATCCGGTCATGTATTGG 16600 29 100.0 32 ............................. TTCATCGTCCAATTGCGTCCATTGATTTTGAG 16539 29 100.0 32 ............................. ACGATCAGATGCTTTACCGTCACCGTATGGGT 16478 29 100.0 32 ............................. TCCAAGCTGTTTATTAATTAATTGTTGCTGAT 16417 29 96.6 32 ............................C TCCAAATATCGTAAAGAGCCACTCTGGGATTA 16356 29 100.0 32 ............................. TACTACGCCCACACCGAGCAAGAAATGTTTTA 16295 29 100.0 33 ............................. CAACTAAACCAGAGCCACTATTACCTGCAGGTG 16233 29 100.0 32 ............................. AGCCCATGACCATTAAGCCATGAGCCTTTGCA 16172 29 100.0 32 ............................. GTCTTGCAGATAATCTGTACTTTGCAAGTACA 16111 29 100.0 32 ............................. AATGTAAATGGCAGTAAATCTGCTAATACTAA 16050 29 100.0 32 ............................. GAGCAAAAAGGACGTTGCAATCGTTCTTGACG 15989 29 100.0 32 ............................. CCTAAATGGATGATTCAACTTATGGATGTTGA 15928 29 96.6 32 ............................C AAAGACTGCTACGCCAACAACTCCACAAACAG 15867 29 100.0 32 ............................. ATGCCAAAACGAAAAAATACCGCAATTAAGCC 15806 29 100.0 32 ............................. CTTTGTCATTTCGCGCCACTCTTTCTACTTTT 15745 29 100.0 33 ............................. CGATTCTGATGGGCGAACAGTCGGGCACGTTAG 15683 29 100.0 32 ............................. AACTGAACTTTATAACCAGCATCATGAAATTT 15622 29 96.6 32 ............................C TCCAAAGTCGAGATCCAGGGAAGAGTCGGACG 15561 29 100.0 32 ............................. AAAAAATGCGATCCCAATGATCAGAAAAATCC 15500 29 96.6 32 ............................C ATTGATTGCATCAAAAACATCATCAACAGTTA 15439 29 100.0 32 ............................. TAGCCGCCAAGTCTTTATATCCTGATGTGTAG 15378 29 100.0 32 ............................. TGGACAAAAAGCAATAGGCTCAAAGACTGAGT 15317 29 100.0 32 ............................. GGCATTTATTGACGCTAAGCCAAAGGATCAAG 15256 29 100.0 32 ............................. GACAATCACGCCAACAGCAGGTTACAAAGTTA 15195 29 100.0 32 ............................. CTAAATATGAAGAATCTGAATATGGAGAAATT 15134 29 96.6 32 .......................A..... ACTATAGCCGCGAGCCTTTAGCCACTTAGATT 15073 29 100.0 32 ............................. AACTACACTAAAGTTATGCCTGATGTACTTAC 15012 29 100.0 32 ............................. AACTGATTTAGTGGGTGCAGTTCTGGATTGAG 14951 29 82.8 0 ...........AC....T......T.A.. | A [14930] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAGGCTTTGGTCAGGTTCAGGACACCTTAGAATCCTACTTTGATTAAATAAATAATTAAAAAATCAATTTACGAGAAAGATCTATTTACACAAAAGATTTGACAGTTTCAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATTATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCTAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTAC # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGTTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAATTTTTGTAAAATACTTTTATGCTAGATTTATATCGCAATAATCAAATGGAATGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACATTTCCATGGATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3702-2634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPM010000064.1 Lactobacillus crispatus strain LB68 Contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3701 29 100.0 32 ............................. TACCCCAGCTTTCGGAATCCTTATCAATTGCT 3640 29 100.0 32 ............................. GTATTTCTTTATTTGTTCATGGACTACAAAGT 3579 29 100.0 32 ............................. ATTCCACTCAATTCCTTTGATAAAAGCACTCT 3518 29 96.6 32 ............................T CGGACAGAGTAGATTGATCATTGCTGAGATTG 3457 29 96.6 32 ............................T GTAAAACATTTCTTGCTCGTTATAAGCGTAAT 3396 29 100.0 32 ............................. TCATTTAGCATTTGACGAGTACGGACGTAGTT 3335 29 100.0 33 ............................. ACAAGAAATACCAGTGGGATCCAGCAACCGTTA 3273 29 96.6 32 ............................T AGCCTTTCTCGCGTTAGCTTCATTAAGTTTCT 3212 29 96.6 32 ............................T CAACTGCAACAAGCAGACCCAAAGCTGACCAC 3151 29 100.0 32 ............................. AATATTTTTGAAATCATTTCTCATATCATTTA 3090 29 100.0 32 ............................. AAAATATGCTAAGGTCTTGGAGTTGCGTATTA 3029 29 100.0 32 ............................. TGTCTGCATTTTTGTCTCTCAACTCTTTCAAC 2968 29 96.6 32 ............................T TACAACGGCGGATATGCTGAAGGCAGGGCTGA 2907 29 96.6 32 ............................T AATGCAATCGGTGGAGCTAACGGCAAAGGCGG 2846 29 96.6 32 ............................T AATAGAACTGCTAGTGATAATGCAACTAAGGG 2785 29 93.1 32 .............G..............T GCTATCAATTGGAGTAGGTGAGACTGTTACAG 2724 29 93.1 32 ............C...............T TTACGTGACTGACTAAAAAACTGAATCCAGGC 2663 29 75.9 0 ...........AC..........A.ATAG | C [2638] ========== ====== ====== ====== ============================= ================================= ================== 18 29 96.6 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : TTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAGGCAGAAATGCTTCTTTTTTTTATTTGGAGTGGCTTTTTTGTAATTATGGCTTTATATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : CTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //