Array 1 52352-55328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVHF01000028.1 Neisseria meningitidis strain 433_NMEN 384_176391_2161658_224_,1+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 52352 33 97.0 32 C................................ TAAAGATAATCCGCACTAATAAAAAATGGAGG 52417 33 97.0 31 .C............................... TTCAGCAGGATTAATCGCCTGCTCAATCATT 52481 33 97.0 33 .A............................... TTTTTTTAAGCGTTTTTTTAAAAGATAGGCAGG 52547 33 93.9 35 AA............................... TGCCTGTACGTTTTCAAAAGTGGCTTTTCGGTACT 52615 33 93.9 33 GG............................... GCCGTTATCGTCGCCAGCGGTGGCAGAATCGCC 52681 33 100.0 32 ................................. AGCCATGCCCGAATCTGCCTAAACTTGAGGGC 52746 33 93.9 32 GG............................... TCGCCGGTGGGCTGGGCATTTTTCGGGATAGG 52811 33 100.0 31 ................................. CAGCGTATGGCCGTCAAAAGCTCGCAAAATG 52875 33 100.0 31 ................................. TCATTTTCATTTGGAATTTGGGCTTCTTATC 52939 33 93.9 33 GA............................... TCAAGTTTGGTTGATAAAACTAAATATCCAAAA 53005 33 93.9 32 AA............................... TTATTTAAATTGCAAAACGCTTTTAAACAGGT 53070 33 100.0 33 ................................. TGCACGTTGTATCGCTCGAAAGCCTTTTTAATA 53136 33 93.9 34 AA............................... AGTTTGCATATCATTGTGATAAAGATGGTCGCTT 53203 33 93.9 32 GA............................... AGAACGTGATTGTTGATATTCAGCCTGTGCTG 53268 33 93.9 32 AA............................... ATGGTCTTTCTTCTGTTCTTTCGGGGCTTCCG 53333 33 97.0 33 C................................ TTGCCCAACCGTCCACGCCGACAACGGGCGTAA 53399 33 97.0 33 .A............................... TCGGGGTGTTTGTACTGCCGATGACTGCCTCGG 53465 33 97.0 33 G................................ GGGAAGAGAAAGAAAGGATTCGATATGTGCAAG 53531 33 100.0 34 ................................. ACCATTGGTTTGCCAGTTCGTCGATTTTGCTTAC 53598 33 97.0 32 .C............................... ACTGGGGATATTTATCATATTGATGGTGCAGA 53663 33 97.0 33 A................................ TTGAGAAACGTCATCCACCTGTTCTCTAATGCA 53729 33 93.9 32 GG............................... GTCAAATCAGGCTTAAAGTAGCCTTCCGCTTT 53794 33 93.9 31 GG............................... TTGTTGTGTTTCGCGGTTGTATTCTTTAACC 53858 33 97.0 33 .G............................... ACGCTTCGCCTCTTCGACGCTGTCAGCAAATAC 53924 33 93.9 33 GG............................... AAGCCCCAGAAACGCCTAAAGAAGTAAAAGCAG 53990 33 93.9 33 AC............................... GCCAAACTATCACAATAAGCGAACGTGGTTCAA 54056 33 93.9 32 AC............................... AGGCGATTGCCGAAGAATACTTTGCGACCAAG 54121 33 93.9 32 AC............................... CATCCCGTCAAATTGCGGATGGCTATTGATAA 54186 33 100.0 31 ................................. CCATTGACATCAATCCTTTCGATTGTGTGAT 54250 33 100.0 33 ................................. TTCATTTTGTTGGCAGGTATTCTCCAAATTCCT 54316 33 93.9 32 GA............................... AATATCAATTTCCGCTTCAAACGGTAAAGGGA 54381 33 97.0 32 .A............................... TTTTGCTTTGTCATATACTCGCGCATAACATG 54446 33 93.9 32 AC............................... ACATTTACCGCCTAGATAGGCGGTTTTCTTTT 54511 33 97.0 32 G................................ AAGACATAAGGCCATGCGGTCGGAGGTGTCTT 54576 33 97.0 32 .G............................... CCGCCAAGGGTACTCACGTTATGAGTACCCTT 54641 33 100.0 31 ................................. AGCCGTCGCCTCTTGGTTTTTGATGTAACCA 54705 33 97.0 32 A................................ TTGCGTCCTGCGTTCTTTTTGAGAATTAGCGC 54770 33 97.0 31 G................................ GCTAAATCGGGCTTAAAGTAGCCGTCTGCCT 54834 33 97.0 32 .G............................... GTCCATTCCCCAATCGGGGCGGCTTGTTTCGT 54899 33 93.9 32 AA............................... GTGATTCTCGCTTCCCAATTTCAGACGGCCTG 54964 33 97.0 32 .C............................... ATTGCCGTCTGCTTTGCTTTGCACTGTCGTGA 55029 33 97.0 32 .C............................... CCTTTGAAACAAATTAATTTCGAATTAAAACA 55094 33 93.9 33 AC............................... CAATCGCCACGCAACATCATGACATTGCCCACG 55160 33 97.0 37 .C............................... GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 55230 33 97.0 33 .C............................... CAGCAAAACCCTCTACTCGCTGCCTTTACCGGC 55296 33 93.9 0 CC............................... | ========== ====== ====== ====== ================================= ===================================== ================== 46 33 96.2 32 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTTTGGACTACGGCGTGCGCGTACAGTATTCGGTGTTCGAATGCGACATCGCGCCCGATCAATGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGTAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGG # Right flank : CTCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGC # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //