Array 1 662358-663903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059443.1 Campylobacter fetus strain CFF00A031 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 662358 30 100.0 34 .............................. TCATTTTTGTCATCAGGACCAGGAGAACTGACAC 662422 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 662488 30 100.0 36 .............................. TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA 662554 30 100.0 36 .............................. TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA 662620 30 100.0 36 .............................. AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT 662686 30 100.0 36 .............................. GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT 662752 30 100.0 36 .............................. TGGGGATTCGATGAAATTTTTAACTATATAGCATTC 662818 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 662884 30 100.0 36 .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 662950 30 100.0 36 .............................. ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC 663016 30 100.0 36 .............................. CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA 663082 30 100.0 36 .............................. TTTGAAGTGCACGACGCTATAACTAGAACACGGATC 663148 30 100.0 37 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG 663215 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 663281 30 100.0 36 .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 663347 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 663413 30 100.0 36 .............................. TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC 663479 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 663544 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 663610 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 663676 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 663742 30 100.0 36 .............................. CGTTTTATTTCCTTGGAAAGCAAGGTATAAGCGTAG 663808 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 663874 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.9 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGTGACCACATTATAAGTCAGGCTCAAAACATAGCTAGAGTAAATCAGTCTAGTAAATACGGAGTAAAGCATTACAAAGTATTAGCTAGGATAGATAGCCGTACAAGCGATATCTGTAGAAGTATGAACGGACGCATAATCCCAGCCTCGCATATAGAAGCTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTGGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACTGGGGTTGAGAGAGTAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 681584-682998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059443.1 Campylobacter fetus strain CFF00A031 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 681584 30 100.0 36 .............................. TCGTTAATATTATTTTTGTTGCAATGTTTGCATTTT 681650 30 100.0 36 .............................. TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG 681716 30 100.0 36 .............................. AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG 681782 30 100.0 36 .............................. TTGCGCGGAGATAAACACTCTTAGCACGGAATTTGA 681848 30 100.0 34 .............................. TTTTGTCATCAGAACCAGGACCAGGAGAACCTGA 681912 30 100.0 37 .............................. CCTTTATAATCTATACTAAAACCATTTAATATAATAT 681979 30 100.0 36 .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 682045 30 100.0 36 .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 682111 30 100.0 37 .............................. GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT 682178 30 100.0 36 .............................. GATAATCAAAATTTTACAAAGCAAGTTCTTGTACAC 682244 30 100.0 36 .............................. CCATTTAGCATATCATATACTTGATCTGCCATTTAT 682310 30 100.0 36 .............................. ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA 682376 30 100.0 36 .............................. TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC 682442 30 100.0 36 .............................. TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA 682508 30 100.0 35 .............................. TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC 682573 30 100.0 36 .............................. TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT 682639 30 100.0 35 .............................. TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG 682704 30 100.0 36 .............................. TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT 682770 30 100.0 36 .............................. TTAAATCTCCTTATCGCTTATTATATTTATTAATTT 682836 30 100.0 37 .............................. TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA 682903 30 100.0 36 .............................. ATGGAATATTTTTGTTAAACGCATTCATACAAAATT 682969 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CGGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGCCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTAAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATTCCGTATGGAACTATAGCAAGCTGGAAGAGATCTGATGGTTACACAAAAGATATATATCTTTTCTTTAAAAATTTAGACCCGGAATTCTTAATAGAGAATTTTGGAGCCAAAACTCCTATAATTCCTTTACGGGATAAAGAAGTAGTAGGCGCAATAGGTATTTCGCAAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //