Array 1 9107-8349 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVMB01000035.1 Bacillus cereus strain AFS095084 AFS095084_120_H6_Contig35_140618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9106 32 100.0 33 ................................ ATTAACAAATTTCTTATCGATCCATACATACTT 9041 32 100.0 35 ................................ CAGAAAGCAAGACTCTACTTCGATACAATCTACGG 8974 32 100.0 33 ................................ CTATATATAGCCAGCGTCCTCTTTTTTATATAA 8909 32 100.0 35 ................................ TTTTGTTGCGCCTAAGTCTTTCCAAGGTCCTTTTA 8842 32 96.9 33 ...........A.................... CTTAGAACCTATAAAAGAACAACCTTCTACCAA 8777 32 93.8 34 .........C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 8711 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 8643 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 8578 32 93.8 34 A..........A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 8512 32 96.9 34 .........C...................... GAATACGATTATCAAGATGAAAGCACAAAAAAAG 8446 32 93.8 34 .........C.........T............ TACCTCGGGTTTATATTTATCTGGAACGCTCATA 8380 32 96.9 0 ..............G................. | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 96.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTTTTATACAAATTAGTTTATTAAATAAAAACATTTTTATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGTGTCGCACCTTATATAGGTGNN # Right flank : AGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTACGAGATAAGCAATTA # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-826 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVMB01000025.1 Bacillus cereus strain AFS095084 AFS095084_120_H6_Contig25_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 32 100.0 34 ................................ CTTATTTAGCAAAGGATTCTGATGGGAAGCTCCA 67 32 100.0 35 ................................ TCATATGTACGTCCGAGTAACTGCAAGTAACCCAT 134 32 100.0 34 ................................ TCTATATTCTCCGCATTGACAATAGTCGATCTTC 200 32 100.0 35 ................................ TACAGTTACGTTGCAAAATGAAGAAGGAAAGGCAG 267 32 100.0 34 ................................ TCCCTCTCGATCCATAGGCTTATCAGGAGTCATT 333 32 100.0 35 ................................ TCGATACACAAATCTAAAAAGCTAACAATCGGGTC 400 32 100.0 34 ................................ AAAAATGTCTTTTATCGTCAATATTCTGCTCCTC 466 32 100.0 34 ................................ TTTAGTAGGTTTGTAAGGCATTTCCAAGAATAAC 532 32 100.0 34 ................................ TTTTGGCGTTGTTATCAACGTTTGGTACATAACT 598 32 100.0 33 ................................ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 663 32 90.6 34 ......T..C...A.................. ATTGGACGTAAGCGTGCTGCCACGAAAAATGATA 729 32 96.9 33 .......................A........ CCATTAACGAAAATATAAAAAGCATACGTGCCG 794 32 71.9 0 ....T.T..C.......A.T....T.A.G.C. | A [817] ========== ====== ====== ====== ================================ =================================== ================== 13 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TGGTAAGATGCTTGATAGTAATTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATACATACGGAAACAAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAACACACAGTTAGCAGAAATGACAGGTTTTACTAACGAAGATACGGAGAAAATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1404-1896 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVMB01000025.1 Bacillus cereus strain AFS095084 AFS095084_120_H6_Contig25_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1404 32 84.4 35 ....T....CT.G.....A............. CAGGCTGTCGCTTAACGGTGTGGCTGGAGCGTTTT 1471 32 87.5 32 ..........TC..G......A.......... TAAAAACTCTAGTAAATATCCTAATGGTTTAG 1535 32 100.0 34 ................................ AAAAGATGTGTTATATTTTATGTAAGAATTGCAG 1601 32 84.4 33 ......T..C.CG..............A.... TTATGGATGTTTACGATTTCGATTACCGGGCTT 1666 32 96.9 34 .....................C.......... GGCATAGAAGGTGCTGGATCAACCTGCCCGAACT 1732 32 96.9 36 ....T........................... AATGAGGATACCTTGCAAGTATGGACGCTTGGGAAG 1800 32 93.8 33 .G..................A........... CAGGCACAGATCTTTAATATGTTAAATCTCCTT 1865 31 84.4 0 ..........T...-............AT..G | G [1877] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 91.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : GATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAACACACAGTTAGCAGAAATGACAGGTTTTACTAACGAAGATACGGAGAAAATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGACCGCAATGAAGAAAACATTAGAATGATTGAAGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : GACTGGTAAGATAATTGATAGTAATTTAGTGTCTCTGTTAGAGTAAGAGGACCTGCTTCAGTTCATACGACGACTAGTATTGATCCGATTGACATTATACTAGTATGCAGATTACGAAAAGTGTAAGTTCTGAGTATGGGAAGGATAAAGGTTTAGATACGATGGGGATGAAGCATCGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTATTAATATGCAATGAATAAGTAAGACAGATTTCACCAAATGGGATACGGAAAATATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGAATCAGTAACACGCCCTGAAGAAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAGACTTGGCCAGTACTCTTCCGCAAAAGTGCACCGTTTATTGGATATTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCGATTATT # Questionable array : NO Score: 6.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //