Array 1 226240-227061 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIZ01000003.1 Methylobacter tundripaludum strain OWC-DMM Ga0139038_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226240 29 100.0 32 ............................. CGTCGTTTCCGAGGCTGATTTAGTCGCTCAAG 226301 29 100.0 32 ............................. GCGGTTTGAGTTCGGTTCTGCCTGCCTACTAT 226362 29 100.0 32 ............................. GTCGCCCTTATGACCATGTCACTATCTACGCC 226423 29 100.0 32 ............................. TCAATCAATCGCTCAAATCTTCCGCCATCTAG 226484 29 100.0 32 ............................. TCGACACCCTTCTGACTCGCGAATCAGTTTTA 226545 29 100.0 32 ............................. GTCAGAATCAGGCGAATATGTATACCGGCATA 226606 29 100.0 32 ............................. CATCAGCCGAGTAGACCGCGCAAGGTCAACAT 226667 29 100.0 32 ............................. CGGTGGCCATGGCGGCGGTAACCAACAACGGC 226728 29 100.0 32 ............................. GTCAGAATCAGGCGAATATGTATACCGGCATA 226789 29 100.0 32 ............................. CATCAGCCGAGTAGACCGCGCAAGGTCAACAT 226850 29 100.0 32 ............................. GCTACCGTATAGGGTTCGTTCAGCGTCGCTGT 226911 29 100.0 32 ............................. CGACCTATTCGATCCGCATTTAACGCACGCAT 226972 29 100.0 32 ............................. TCATCAATATGGGTTTCCTAACCGATTATCGT 227033 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : AAAATCATTCCCACCATAGAAGAAGTGCTGGCCGCCGGTGAACTTGAACTGCCCCAACCTGCTGAAGAGAACATCGCTCCAGCCATTCCTAACCCTGAGAGTATCGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCACCGATTAAGAGGGCGATTAGCGGTTTGGCTGATCGAGATTCGGGCGGGCGTTTATGTCGGCGATTTATCGGCTAAAGTCAGGGAGATGATCTGGGCGCAAATTGTAGACGGTATTGAAGAAGGCAATGCGATTATGACCTGGAGCACCAATACCGAATCGGGTTTTGATTTTGTTACTTTGGGGAAGAATCGTCGTCTGCCGATCGAGTTTGACGGACTCAAACTGGTTTCTTTTTATCCGCTTGAAGACCAAAAAGATAACGATGCTCTTTAACAATTTAATGGTAAAAAACGGCTGTTTTTTCGGTGGAAAAATCGGAGTGGTTATTTCGGTTGATTAACAATATGTTATGATCAGT # Right flank : GCAGGCCCCTAGCCGCGAAACCGACGATCTGTAGCGTTCCACACACCCGCATAATGAATAAACTCCATTTCATCCGCCTTTATCAGTCGAATCCCTGTCATCCGCGTTCTATTTTTCATTGCCGAATAGTTGCGATAGTGCCGCGCGAAATCGATTTTTTCATCGTCATATCGTTAATCTCATCGCTACTTTGAGCAGTTTAAAGACGGTAAGGGAAATTTGGTTGTACCTTGTCCGCTTCATATCTTACAATCCCACCGGGTGTGCAGTAAGGTTACTGGGCGTGTAGGTTCCCCACACATTAATAATATTAAAAAATATTTTGGAGGATAGTATGTTTAAAATTCGTTCGCTGGTTACAGCGTTGGCGTTGGCAAGTTCGGTTTCGGTGGCTTCGGCTTGGGAGACGTTACCCACAGAAGCACCGGCACCGGCCGATAATGCTACAACGCCTGCTAAGGTTGAGTTGGGTCAAATGCTGTATCACGACCCGCGCCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 174154-173698 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIZ01000004.1 Methylobacter tundripaludum strain OWC-DMM Ga0139038_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174153 29 100.0 32 ............................. AAAATACAACCCAACACAACCAACCCAACCGA 174092 29 100.0 32 ............................. CTTCTCTAATTCTTCGGGGTTTTTCCCCAAAA 174031 29 100.0 32 ............................. TTTTCAATATGCCAACGGTTTCGTTATGAACA 173970 29 100.0 32 ............................. CACCATCCATCCCAGCCCGGCGAATTGATGCG 173909 29 100.0 32 ............................. TCCAGATAGTGTACGCTATAGCCGTGCGTCAC 173848 29 100.0 32 ............................. ATCGACCCGAAACGCATCGTCTCGCTGATCGC 173787 29 100.0 32 ............................. GTGAGGCGCACAAGTTCGAATTATTAAATGCA 173726 29 93.1 0 ..........T.................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GCGTTCCCCACACCCGTGGGGATGAACCG # Left flank : AAAGAGCAAAAGATTGGGCTGAATAAGGTTGCCGGATGAGTGAGATAAAACTTCGCGAATATGAAAACTTTCATATTGTGTTATGGCTTTTGAAGGATACGTGTTGGTTGATGGAATGGAGGCTTGAAGGCATTTTCATGATCGTGCCGACGATTGCGGCGGCTTTTCACATTACCTGGCTGGGACGAAAAAACAGCGCAAACCTGTTTCATAATTTAGCGGTCAGTAGCTGGATATGCGGTAATGCGGTTTGGATGATTGGGGAGTTCTTTTTCAACGACAGCTTTAGGCCTTTTTCTAAAGTGTTTTTCAGCATCGGCGTGGTGTTTCTTGCGGTGTATTATTTTGGTGTGTTGCCGAAAGAAAAACGCGCCCGGCGATGAAAAGTGTCATGCTGAACTACTTCGCTCTTTAATAAATTAATGACAAAAAGCGGCTGTTTTTTCGGTGGAAAAACCGGAGTGGTTATTTCGTTTTATTAACAACATGTTATGATTAGT # Right flank : ATTTCAGATTGTTTTAGAGTGTGTCCTGTCAGCGCATCCACTTCAGTTACCAAGTTGGCATGCCATGAATCTAACGGGTTCTTGCTGGATTAAAGCATCGCTTTTAAGCCACATTCGCTGCGAGACAGGAGTCGAGTAGTCCCCAGAAGCGATAGGGCATGTGTTTTCACGAAGCGTTTTTTTGCGTAGTGAAAATGCAGGCTTTCCGAAATCGCGTCGAGTCATTGCGAGAACGATGTTGGATACCCCTTGCTGGGTATCCAACGAATAAAGCAGGACGGCTGGGGCAGCCGCAGGCATTAGCGGTCGCGTGTTTTTTGCCGCTTGTTGGGCAGGGATGCCCATAAAAGCTTTCGCAAAAATAGCGACTCCCCGGTCTTTTTGAGGTTTTTGGGCTGTATGGCTATTTTGTACTGTTTACGTTGAGAAAATGAAAAGCATCATTGTAATCTCTCCCGTCCATCAGCTATTTCCACAACATTTTTACTCGGGCTGTTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71350-68994 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIZ01000009.1 Methylobacter tundripaludum strain OWC-DMM Ga0139038_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 71349 32 100.0 33 ................................ TTGGAGCATTGCCAACGCTGTATCCAGCTGCTG 71284 32 100.0 32 ................................ CGTTGAAATTGGACAAATACCGGGCGGCAGAC 71220 32 100.0 33 ................................ GTGCCGATTGCGGTGTTTACCGAAACGCAAAAA 71155 32 100.0 32 ................................ TAGCAAGCCGCACGCCGGGGCTGAGGTAGCAG 71091 32 100.0 33 ................................ GGTTACGCCACCCCACTCAAAAACCATTGTTAC 71026 32 100.0 32 ................................ AGCACAACGGCCTTGCTGGCTGTCGCTGTGCC 70962 32 100.0 33 ................................ GCGTTTTTTAGTCGCGACCTCATCCTTTTTGTT 70897 32 100.0 33 ................................ CAGACATAACGCTTAGTACAATGCCGGGGGCTT 70832 32 100.0 34 ................................ AGCCCGTCAACTCAGAGATTTAAAAGGAACCGGG 70766 32 100.0 33 ................................ TATTTATTCGAGCGCATCCGCATAATCGGATGC 70701 32 100.0 32 ................................ TATGAATAACTGGAAATCTTGTAGCATCGGCG 70637 32 100.0 32 ................................ TTTTGTTATCAATGGCTCCCAGTCTGGATGTG 70573 32 100.0 32 ................................ ATGGAACGCAAAGAATTACGGAAAGGTTGCCG 70509 32 100.0 33 ................................ CCACCCAATATCATCGGGTTCCATATTGTGCAG 70444 32 100.0 33 ................................ TGACCGGATGACCAAAGTGGAACGGCTGAATAA 70379 32 100.0 32 ................................ CGCCCATGCCTACGCCTTGTCCGCCGGGCTGA 70315 32 100.0 32 ................................ ACGTATTGCAGCGCATGGCCGTTGTTGGTCAC 70251 32 100.0 33 ................................ AATCCGTTGTCAGCGCCGGCGTTTATACGCTGG 70186 32 100.0 32 ................................ TATCACATCTCGTTTATGATCTGGTACATAAA 70122 32 100.0 32 ................................ CTTTAATAAATGGCGGCGGCGGATTGTTGTGG 70058 32 100.0 33 ................................ CGCTTGAACGCATAGTTATACGTGAGGATATAT 69993 32 100.0 32 ................................ ATGGACGGCTAACGGTCGATGGCGCGTTCCTG 69929 32 100.0 32 ................................ TATTTAGCCAGTTGTTAGAACCAGACACGGGG 69865 32 100.0 32 ................................ AGGAAATGGCAAACATAGCGCGGATTACCGTT 69801 32 100.0 33 ................................ AATTATAGCCACTCTCATTATGCCACCCATCTT 69736 32 100.0 32 ................................ TTTAAGCATGAGATGGTGCCGAATGAGCGAAG 69672 32 100.0 32 ................................ AAAAACTGTAGCGGTAGTAATATTGGCAGGAG 69608 32 100.0 33 ................................ CGGCAAGCGTACACCAACCTACGACGCTCCGAA 69543 32 100.0 32 ................................ ATCCAGACTTGTCCGGTGTGGATAGTTTTGCC 69479 32 100.0 33 ................................ ACAGCTCATTGGGGTTTAAGCAGTTAGACTAAG 69414 32 100.0 32 ................................ CTCTGGGGAAATTCGGCCGCTGCCGATGCTAT 69350 32 100.0 33 ................................ GTGATGCTTGAGCCAATTAAAAACACCGATTTA 69285 32 100.0 32 ................................ AAACTGAGTACGTTGCTCTGGCGTCAGTCCGT 69221 32 100.0 32 ................................ TCTGCGGCGGCTCCTGGGGTTTATGCCATTGC 69157 32 100.0 33 ................................ ACTATAGAAAAGAGTATAGCTACAGAAGATACG 69092 32 96.9 32 ....................A........... CAGTATATACAAACTGCCTACAGTTTGGGCAA 69028 32 78.1 0 ................A.T.ACAA.......T | T,TT [68997,69002] ========== ====== ====== ====== ================================ ================================== ================== 37 32 99.3 32 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TGCCGTTTTTGTGGAAATAGAGAAGGGGAGTCAATATGCTGATTTTAGTGACCTACGATGTGAGTTTTCAAAATGAATCCGGGCCGAAACGCCTGCGTAGAATGTCCAAACTATGCCAAGTATACGGACAGCGGGTACAGTATTCGGTATTTGAAATCGAGGTTGATATGGCGCAATGGACGAAATTAAAAAACGATTTGATAGCCGTGATGGATGAGTCGTTAGATAGCTTACGGTTTTACTACTTGGGCAATAATTGGGAGCGTCGAATTGAACATATCGGTGCCAAAGCTGCATTGGATTTAAACGGCTTGTTATTATTGTAATGCGAACCTGAAGCTCGCATAAAAAGCCAATGTTTCGCAGTAGCTTTAGTTAATTGATTAGTAAGTGTTTTTTGTTATGGGTTAAATGATTTAAAATGCTTTTGGCAGATGTTTTAATTGGTTCGCAAATAATAGGCTTTTGGGCTATTAGATTCAGTCAGTTAAGCAAATGCC # Right flank : GGTCGGAATTAGGTTTGACTAGGAGTCCTGTCCGACAGACTCCTAGCGCCGGGAAAGAAAGACAAGCGGTTTTGAGTGCGCCCATTCGGTATTCATCCTTCAGCATGTGGTGATGGTATTCTCAAGGGGCGAATTAGCCCTAGCCCAGATAACAGTCTTCTTCGGTTTGTGTTATCGCATTTATGCAATCGTCTTCGAGTTGAGTCACGCTCATCCTTCAAAAATGAAAATCAAATAGCCTGATTTCGTTTGGACATGCAATATCGAATACAATCAGCATGTTCTTTTTAAAGTTGGGTTGCCGTCGTTATAAATGCAGTGGATTAATGCTGTAAAAATGCATATTAACCATAAGCTGAAATTAAATTTTATAAAATATATTACTTCATCAAACAGAAGGTTATCAGTGCAAACCGTTTACGCAGCCAAAAAACGCTATCAACATCTGTATTTCCAAGTCCTGACCGCCATCGCCATCGGCATTGCGCTCGGCCACTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //