Array 1 5184807-5184358 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848258.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5184806 28 100.0 32 ............................ TGCAAGCCGAGCTTGAGCTGATTGCTCGCGAG 5184746 28 100.0 33 ............................ AACATACGCGAGGGAGACCAACGCCGCCGCGAA 5184685 28 100.0 32 ............................ TTGGAAACGAGCACGGCGACGGCGCTGGCGAG 5184625 28 100.0 32 ............................ AGAAAGTAGCGCGCGGGCGAGGCCGGCAGCGC 5184565 28 100.0 32 ............................ TTCAGTGGCCGCAACGCGCTCTTCCTGGTGGC 5184505 28 100.0 32 ............................ TGATGCGCCACGCCTGGGAGAAGCTCGCCGTC 5184445 28 100.0 32 ............................ TTCGTGCTCTCCACCGAAATCCTCCTCGGAGT 5184385 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CTCAGAAATGATCCAGAAGTTCCGTGCGTCTATCCCGCG # Right flank : TTGCCCAGATGGTCAAGCGTTCGACGCGACGAGCTTGCCACCTATCAGTTTACCCAGGCGGCCTGTTGGTGTGCACAACCGGCGGACCGAAGCTCGGTAGCGCACCCCCGAACTCGGCGAGTCGCAGGAGCTTTCTCAGGCCGCGCTGGAACCACGACAGGCAGGATCGGGCGAGCTTGCGGAAGCTCCAGTGCTCGGGGTCGGCCTGCGCAGCGGTTTTTTTTCGAGCGGATTGGGGGATTCCCTGGCATCACGACAGCCGGTCTCCACGCACCAATACATGGCCAGGGTCATGATCAGGACCAGCCGGGCGACCCGTTCCGGGCAGCGCAGTTGGGTGTCTTCCAGACCGAAGCCGCGGCTCTTGAAATCCGAGAACATCGGCTCGATGCCCCAGCGCAGCCCGTAATCGCGCACCGCCGCGGCGCTCGGAACACAGTCCATGGCGACGATCCACGGCTCGGGATGCCCGGCCTCGTGCAGCACGCCGAGATTGGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 736-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848270.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 735 37 100.0 35 ..................................... CGCCGTCAACGGCGAGCATTTGAGAGACGTGCGTC 663 37 100.0 33 ..................................... CCCTTGAGTGCGTCCTTAATGGATTGATAAAGC 593 37 100.0 35 ..................................... CGCCGCAATCTCGCCGCAACAGCGGCAGAGGTGCG 521 37 100.0 32 ..................................... TGGTCGAACAGCTCACGGCGATCATCAAGTTC 452 37 100.0 36 ..................................... CGACTGTCGTTCCGTGGCCTTTCATCGCTTCTTTGA 379 37 100.0 35 ..................................... AGGCGTCCAAGTGGACGCTAGAGACACTTGCGTTT 307 37 100.0 36 ..................................... TTGCGTCTCGTCCGAATCCCCTTCATTCGGAATCGA 234 37 100.0 33 ..................................... TCTCCAAGTCCTGTGACGCGACCCTGATGAATC 164 37 100.0 34 ..................................... GCGTTGTCCATGCCGTATTCGGATCTTCGCCTTC 93 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 34 GTTCGAATCAGAGACCCGTTCTAAAGGGGATTAAGAC # Left flank : GGTCGAGGAGCGCGAGACCCTGCTGGTCCCGGCCCGTCTGGTGAAGCGGCATGCGACCGAGCGCAGCTTTGCACTCTACGTGCGCGGGGAGTCCATGACCGACGACGGTATCGATTCGGGTGACCTGGTGGTCGTGGAGCAACGCCCGACGGCGGAGAACGGAGAGACGGTGGTGGCGCGGATCGACGGCTACGGAGTCACCCTCAAGCGCTTCTACCGGGAGCTCGACGGGATCCGCCTGCAGCCGGCGAACGACGCCATGGACCCGTTGGTTTTCGTCGAGGACGAGGTGGAGATCCTCGGGGTGGTGTCGGGGGTGGTGCGGGTGGGGTGAGCGTGGTCGCCGCGGAATCTGGCTTGAACGGTTCCGGCACCCGATGTAGTGTCAGCTGCGTGAGAGCCGTCGCCGCAGAACACAAAACGCCAACTTTTCGGAAGCGCGAAAAGTCCGCAACCCCCCTTGCAGGTGGTTGTCCAGGAAGAGGTTTTTCGGCAGTGCG # Right flank : CCAACGCTCTCCTCCGAAGAGGAGAACACGAGGGTTGTTCGAATCAGAGACCCGTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAATCAGAGACCCGTTCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 25-774 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848277.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 ............................ AACGCCGAATGGGCGGCCATCGGGCTGCGGTG 85 28 100.0 32 ............................ TTGTCTAGCTCCAAGTTGGCAAGCTCAGCCTT 145 28 100.0 32 ............................ AAGACCTTTCCGCGACGCAAGGTCCTCCTCGT 205 28 100.0 32 ............................ ATCAGCTATCACCGGATGGGCGCGATCAAGGG 265 28 100.0 32 ............................ ATTGCGCGACCCGGCGCGCCCTGGTCATCCTT 325 28 100.0 32 ............................ ATCCCTCAAACGGAATTCCCCGCAGACCTCAG 385 28 100.0 33 ............................ AAGAGCGCGCAGATAGCTTATCGCCTCCTCCTT 446 28 100.0 32 ............................ CGATCCGTCACCGCCCGAGACCATTCGACGCC 506 28 100.0 32 ............................ CGATCCGTCACCGCCCGAGACCATTCGACGCC 566 28 100.0 32 ............................ AGGGTGTAGGTCACGAAAAGAAGCACGCCGCC 626 28 100.0 32 ............................ ATCACACAAACCCCTGCGAAAACGCCGCCAGA 686 28 100.0 33 ............................ TTGACTGCGGGTGCTGCGCCGGTGTGTGACCTT 747 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GAGACGACCGGGCAGACCCTTCGAG # Right flank : ATGCTCAAACGGGCGCGCTCGCTTATGGCTGCGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 793-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848279.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 792 28 100.0 33 ............................ CAAAAGCGGCGTCTTCCACTGACAGTGATCTGC 731 28 100.0 32 ............................ ATACCAAGGGGTCCGAGACGTGCGGCGTTGAT 671 28 100.0 32 ............................ TTTCGAAAGATCGCGCGCGCTAGCTGGGATAT 611 28 100.0 32 ............................ AACGGCGCGCAGTCGCGCGAGTCCGCCGTCAT 551 28 100.0 31 ............................ GATCCGACCGGCGAATTTTGCCTATGTGCTC 492 28 100.0 32 ............................ CTGGCGCGCCAAGGACTTACGACACGCAAAAT 432 28 100.0 32 ............................ ATGATGGACGCCCTAGCTCAGAAACAGCAGAA 372 28 100.0 32 ............................ GTCCCCAAGGCCGGCGCTCGGCGTGGTGTATT 312 28 100.0 32 ............................ TCAAAGGCGTCAAGCCCGAGTCAAGCTACCGC 252 28 100.0 32 ............................ GGTCTGGCGTCGAAGCGGCAGGTCTACACCGC 192 28 100.0 32 ............................ TCGGAACCCTTAAACTCAACCATCAGGACCAG 132 28 100.0 32 ............................ TTCCTGATCGCGGATGGGACCGGCGCTGGCAA 72 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GGGGGCGCGGGTCTGCTTGC # Right flank : ATTCAGTGCCGGCGCGATGCTCGGCATGGTCCTGTTCACTGCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16-779 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848281.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 ............................. GCCCGCAACATGCGCGGCATGGTTAAGATGCA C [18] 78 29 100.0 32 ............................. TCTGTATTGCGAGCGAGTCAGGTGTTCCGGGT 139 29 100.0 32 ............................. TTTGCCTTGACGTCTGCGGAGGTGTGATATGC 200 29 100.0 33 ............................. CGGCCCTGAGCCGCGCGGCGCTGGCTCAAGAGC 262 29 96.6 32 ............................A CCATCAAGTCCGGGCGCAGCTTCACGCCGCGC 323 29 100.0 32 ............................. CAGCTTTATTCGGCGAACAACCCGAAATCCGG 384 29 100.0 33 ............................. CTCGGCATGGGCGCATCCGGATGGCGCAACGCC 446 29 100.0 32 ............................. GATGGCTTTCAGCCGCGCGGCAATACGGATTA 507 29 100.0 32 ............................. ACGCTGGGGCTGTTTGCGCAGGGCATGGAGCT 568 29 100.0 32 ............................. ACGGTCGACAAGGATGCGGAGACGAACAAGGC 629 29 100.0 32 ............................. CCGCTGATGATCGAGGCCGACGCGTCGTGAGC 690 29 100.0 32 ............................. GAGTGGGTGCTCGGCCAGCTGCAGTTCCTGCG 751 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GATGCCGATGAATTGG # Right flank : AGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [13.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62-668 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848285.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 62 37 100.0 36 ..................................... CTTCGGGGTCCTGCAGGATGTGGCGGCCGTTCTCGG 135 37 100.0 33 ..................................... GAGAACTTCTGCGGTGACCCACTTCATAAAGGG 205 37 100.0 34 ..................................... GCGGGCTGTCCAGGTCATGCGTCGTCGTCGCGCA 276 37 100.0 34 ..................................... GTTGCTACTACGCACTTTGTGCGTACCCCTCTCG 347 37 100.0 35 ..................................... CTTAATTGTTAAAGAGCAGATATCCAGGCCGTTCG 419 37 100.0 36 ..................................... CCCTCATACAGTGAGACGGTACCGCTGATGGTCCAT 492 37 100.0 35 ..................................... TTTGAGGGAAATCCCCATACATCTTGCGGTACTCC 564 37 100.0 32 ..................................... CTGCGGCGGCGCCGATGGCGAGGGCTAGGAGG 633 36 97.3 0 ....................................- | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 99.7 34 GTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGAC # Left flank : GAGACCCGTTCTAAAGGGGATTAAGACGCGATCAGGGTGCGCAAGGCGTCTTCGTAGGCGCG # Right flank : | # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 624-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848286.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 623 28 100.0 33 ............................ AAAGACGAGCCGGTTCTCGCCAAGGTCTCCGGC 562 28 100.0 32 ............................ GCCGCGCGCAGCTCGTCGGCGTTGGAGTAGCC 502 28 100.0 32 ............................ GCGCTCGGGCCGTATATTGCTGCTGCGTCCGT 442 28 100.0 32 ............................ TATCGGTCAATGCAGAACTACTTGCGTAACGA 382 28 100.0 32 ............................ AACCCCGGCGCTCACACCGCCGAAATCTCCAG 322 28 100.0 32 ............................ GCCAGCGCATGCGCCCAATATTCGTCCGCGTG 262 28 100.0 32 ............................ TCTCAGCCGAATCGGTGGTAAAGCTGTGAATG 202 28 100.0 32 ............................ TGGACCTGATCGACCAGGCGAGACATGCACCC 142 28 100.0 33 ............................ GTCGATGACGAGGTAGACGCGGCTCCGTGTAGG 81 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CAGAAATGACCGTCGCCGGCTCCGGCAGCTACATCAA # Right flank : AGTCGTGCCGCTCTTCGCCGCCGTCGCCACCACGTTCACTGCCGCATAGGCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 626-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848288.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 625 28 100.0 32 ............................ GAAAGCCGGCGGACAGCAGGCGGTTGCCGAGC 565 28 100.0 32 ............................ TTGAGTTGATCCGCGGGAAGGACCGCGGCGAC 505 28 100.0 32 ............................ TGCGGCTCAAGCAAAACACCGGCATCGCCGAG 445 28 100.0 33 ............................ TTGCCGACATCGACGACATGCCCGCCTTCGCAT 384 28 100.0 33 ............................ AGGACGAGCGGAGGTGGACATGCTTACCGACGA 323 28 100.0 32 ............................ ACCAGGTGGAGGCGACGGCCAAGCTCCTGCCG 263 28 100.0 32 ............................ CACTGGATCGAGAGCTTGCCGGCATGCTCGCC 203 28 100.0 32 ............................ TCGGCGAGGTCTGGGTGGAGCAGGGCGAGAGC 143 28 100.0 33 ............................ TCGTCGCAAAGGACGTTCTTGATGGGCATGGAC 82 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AT # Right flank : AAGATCATCCAGCGTGCGGGCAAGCCCGGCGTAGTTCACTGCCGCATAGGCAGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 150-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149 29 100.0 32 ............................. AACACCCCAATCACGCCGACATCCGATGCCGC 88 29 100.0 32 ............................. TCAGGGGAGGGGCACGACCAATTACATGAAGA 27 27 89.7 0 ...C.......................-- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GATCATCCCGCTGATCGAAGAGGTGTTGACCGCAGGAGGTCTGGAACCGCCCTACCCACCGAAGGAATCGGTTCCTCCGGCCATCAAGGAGACGGAGCGCCTGGGCGATGTTGGTCATCGTCACTGAGAACGTCCCGCCGCGCCTGCGTGGACGTCTGGCGGTCTGGCTGCTGGAGATCCGGGCGGGCGTCTATATCGGCACCCCGTCGAAACGGCTGCGCGAGTTTATCTGGAATCAGGTCCTCGAAGGCGTGGAAGACGGCAACGCGGTCATCGCCTGGAATACCAACACGGAATCAGGCTACGATTTCGACACCGTCGGTAAGAACCGACGTATCCCGGTCGATTTCGATGGTCTCCGATTAGTCAGTTTTCTGCCGCCAGATGAACAGTCAAAAGCTCCTTAGCAATCTGGATCTGTCCCTGTCGAAAGACGGGGTTTTTTCGGTGGAACTTCGTTCGTCTAATTTTCTCAGGTGAATCAGCAGGATGATCGCAGT # Right flank : C # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 420551-421233 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 420551 37 100.0 33 ..................................... TTCAGAATTCCGGGAATTACCTCCTCCCCAACC 420621 37 100.0 35 ..................................... ATCTTGATGCCCGCAGGAATGCGTGACGGTGGTCC 420693 37 100.0 36 ..................................... GAATTGTTAAAGATCCAGTCTACTGTCCCGAGATAC 420766 37 100.0 37 ..................................... CCCCGAAATTTCCGCTCTCTGCAATGATCGCGTACGC 420840 37 100.0 33 ..................................... CGAGCGTGCTCTGGCATCTTAGCAGCACGCTCC 420910 37 100.0 34 ..................................... ACCTCAATCACGGTCCTTCTCCTCTAGTCTGGAT 420981 37 100.0 34 ..................................... ATAATCTCGCGTAGCTTCGGGACTCGTCAGGACT A [421002] 421053 37 100.0 35 ..................................... ATCAACCATCTTGGCCTCTTCGGCATAACTCAATG 421125 37 100.0 35 ..................................... GTACCGTTTACCCCCGACGATAACGTCGCCCTGCC 421197 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 35 GTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGAC # Left flank : CGAGCGCTGGAATCATGAGGCTTCGCGGTGGCGAACCCTCGCCCACGCTCAGCATCCGGGCGGTACGCAAACCATCTGAACAGAGGCGTGAACCGATGGGCAAAACTTCTGAGAGAACGCCAACTTTCGGGGAGCGGAAAATATACGCAACCCCCCTTGCAACATCCTGTAACAAAAACGGTTTCCGCGCCGTGGGGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACCCAGCCTTTAATTGGCACATAATAGGCTCCAAAGGTGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACGAGCCTCTGGGTCAAGTTTAGGTCCGCATTGCTGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACGTTGGAGGCGCAGCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGTC # Right flank : CGGCGGACCGTTAATACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAAAGGGGATTAAGACTACCATGGGGATACTGTGCCCCGCCCGACGGCGGGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACCCTCGCACGGCGCGGCGCGTGAGCCCTGTCCCCTGGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACGATACAGGTCGGCAGTGATGCTGCTGTCTTCGTTGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACTGCGCGCGACGCGCGCGAGTGCGTGGCGACGGCGCGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACCTCGGTGCCGATCTGCTCATGGACCCAGGCTGGAGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACGGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 421406-422230 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 421406 37 100.0 35 ..................................... CCTCGCACGGCGCGGCGCGTGAGCCCTGTCCCCTG 421478 37 100.0 34 ..................................... GATACAGGTCGGCAGTGATGCTGCTGTCTTCGTT 421549 37 100.0 35 ..................................... TGCGCGCGACGCGCGCGAGTGCGTGGCGACGGCGC 421621 37 100.0 34 ..................................... CTCGGTGCCGATCTGCTCATGGACCCAGGCTGGA 421692 37 100.0 34 ..................................... GGCTGTGCAGCACTCGATGCGAATCGTGATCCCG 421763 37 100.0 35 ..................................... TACATCTTGCGATACTCCGCGATGATGGCCTTTTC 421835 37 100.0 35 ..................................... CTGGAGGCTGTGCAGGCGGACCTGAGTCTCGGGTC 421907 37 100.0 35 ..................................... GGACCTGAGTCTCGGGTCCGTACATCTCGGTGATG 421979 37 100.0 35 ..................................... CTTGATTGAAAACTTGGTCAAACATGGCAACCTCC 422051 37 100.0 34 ..................................... TCGGCGGACAGGTATTTTGCGCTCATTGATTGTC 422122 37 100.0 35 ..................................... GGCTGCCGCTGCATCCATGGTTGCGCGGTCCTGCC 422194 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 12 37 100.0 35 GTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGAC # Left flank : CTCCGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACACCTCAATCACGGTCCTTCTCCTCTAGTCTGGATGTTCGAATTTGAGACCCGTTCTAAAAGGGGATTAAGACATAATCTCGCGTAGCTTCGGGACTCGTCAGGACTGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACATCAACCATCTTGGCCTCTTCGGCATAACTCAATGGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACGTACCGTTTACCCCCGACGATAACGTCGCCCTGCCGTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGACGGCGGACCGTTAATACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAAAGGGGATTAAGACTACCATGGGGATACTGTGCCCCGCCCGACGGCGG # Right flank : CGCAGCCGACCGACGGATCGTAGTCCGGCCGGGCTGTTCGAATTTGAGACCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGATTACCAACGAGACTCAGCAGGCTCACGTTTTGAGCCACCGGCCGGCGCACACTGGCGCCGTATCCACCATCGCCGGGAGTCTGCACATGGCCAAGAACCCCATCCAGTTCCAGAAGGGTTTGAGTTTACATGCGTTTCTCGATCAGTACGGGACCGAGGAGCAGTGCGCCGACGCACTGTTCGGCTGGCGCTGGCCGGGGGGCTTCGTCTGCCCGGAGTGCGGGCATCCCGAGGATTTCGTCGCCCTGCACACGCGCGACCTGATGCAGTGCAGGCATTGCCACCACCAGGCCTCGCTGACCGCCGGGACGATCTTCGCCTACACCAAGCTGCCCCTGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAATTTGAGACCCGTTCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 1162787-1163165 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1162787 35 100.0 37 ................................... ATGTGCGAATCCCTGAATGGGTCAAAAAACAAGGCGG 1162859 35 100.0 34 ................................... CGTTTTCTGGCCGAGGGTCAGTCGGACACCACGA 1162928 35 100.0 33 ................................... GTGGGCCGGCGCTGCGAGCGGGGCGACGTTGGT 1162996 35 100.0 32 ................................... GCCGACAGAATTTTGTCGGCAACTGACAAGGA 1163063 35 100.0 33 ................................... AGCGCCTATATGACTGGCGGTCGCTTGCTCGAC 1163131 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 6 35 100.0 34 GTTTCAACAGCCTGAACGGCTATGGGCTGGATGAC # Left flank : CCGGCGCAGCGGGCGTTGCGGAGTGAGCCCCAAACGATGCAGGATGCGCCCGACCGAAACGGCACTGAGGCTCACGCCGAACTCGCGTCGCATCAGTTCGCGGACCATCTCCAACGTCCACAAGGCGAATGGAAACTTGAGTTGGAGCGGGTTCTTCTCGCGAATCATCGACGCCAGGCGCGACAATTGCCGCCCGTCGAGTTTCGGCGGGCGGCCCGGCTTCGGCCGGGTTTTGAGCGCATCATCGCCGCCGTAATGATATTTCGCCAGCCACGTATAGATGGTTCGCGGATTGATATCGAGCGTTTTCGCCAAGACTTCCGGACTGGCGCCATCTTCGATGAGATGGACGACCCGCAGGCGAAGTGCTTCTTTGCCCGCACTCGACATCTTACGGCCGTCGGTTTTACGCTTGCATCTCATGTTTCTTATTATAGCAGAACCTGGCTTTACCTACTTTAGGACTAGTAAAGACCAAGCGCCGAAGCACTGGCGGCTCA # Right flank : CAGCGCCTATATGACTGGCGGTCGCTTGCTCGACGTTTCAACAGCCTGAACGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGCTGGATGACGGCTCCTTGCCGGCCCTTCTCGCCTCCTCGGAGGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGGTCGGTTTCAAGAGCATTCTGCGGCCATATGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACCCGATCATGTTCATCCGACCGACACAACTCGTGCGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGTTTTTGCAATAATCGTTGTCAGTGGCGGGAATGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGGGACATGTCTCGGAATGTATATAATGGAGTGGAGTTTCAACAGCCTGAACGGCTATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAGCCTGAACGGCTATGGGCTGGATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 5 1163368-1164225 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1163368 35 100.0 31 ................................... GGTCGGTTTCAAGAGCATTCTGCGGCCATAT 1163434 35 100.0 34 ................................... CCGATCATGTTCATCCGACCGACACAACTCGTGC 1163503 35 100.0 33 ................................... GTTTTTGCAATAATCGTTGTCAGTGGCGGGAAT 1163571 35 100.0 34 ................................... GGGACATGTCTCGGAATGTATATAATGGAGTGGA 1163640 35 100.0 34 ................................... TTGAAGCAAGGCGCAGAGGCCGCAATGCGGGCTA 1163709 35 100.0 34 ................................... ACGCGGAGCCCGGTAACAACGCAAATGTGGCATA 1163778 35 100.0 33 ................................... GTGCAGATGGTGATCGAGGGCCTGCGCGTCGAA 1163846 35 100.0 33 ................................... ATTTATGGAATGGGCATTTCCCTTTGGAAGTGT 1163914 35 100.0 33 ................................... TTCGAAAGATCAACCCAGCCAGCAACAAATTAT 1163982 35 100.0 34 ................................... GTTCCTGTTCGCAGATTACCAGCCATATCTGCAA 1164051 35 100.0 37 ................................... CCCATGCCATGGCGACCATGGGAGAATACGGTTGGGG 1164123 35 100.0 33 ................................... GGATCTTCGATTGAGATGGCCCATCGCCAAGTG 1164191 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 13 35 100.0 34 GTTTCAACAGCCTGAACGGCTATGGGCTGGATGAC # Left flank : GCCTGAACGGCTATGGGCTGGATGACCGTTTTCTGGCCGAGGGTCAGTCGGACACCACGAGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGTGGGCCGGCGCTGCGAGCGGGGCGACGTTGGTGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGCCGACAGAATTTTGTCGGCAACTGACAAGGAGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACAGCGCCTATATGACTGGCGGTCGCTTGCTCGACGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACAGCGCCTATATGACTGGCGGTCGCTTGCTCGACGTTTCAACAGCCTGAACGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGCTGGATGACGGCTCCTTGCCGGCCCTTCTCGCCTCCTCGGAGG # Right flank : CCGATACAACGTGAGATAGTGAATGCTCACCACGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGATGACGGAGGCGATTCGCGTCCTCTTGGCGCGTCGGTGTGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACATACTACGAGTTCTTCAGGGAGTACGGAAACGGGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACTGGCGGAGCGCTTCCACAACTGCCTTTCTGTTTGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACATCTGGTGACGCTGTCTTTGGCGCTCCCCTCTCCGGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACACGTGGGGAGATGCTGGGTCTGCTCCTGGAACGAGTTTCAACAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAGCCTGAACGGCTATGGGCTGGATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 6 1164437-1165429 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 1164437 35 100.0 34 ................................... ATACTACGAGTTCTTCAGGGAGTACGGAAACGGG 1164506 35 100.0 33 ................................... TGGCGGAGCGCTTCCACAACTGCCTTTCTGTTT 1164574 35 100.0 36 ................................... ATCTGGTGACGCTGTCTTTGGCGCTCCCCTCTCCGG 1164645 35 100.0 34 ................................... ACGTGGGGAGATGCTGGGTCTGCTCCTGGAACGA 1164714 35 100.0 31 ................................... ACCTTTGCGAAGAGGTTCGCCAAGAACCGTT 1164780 35 97.1 36 ........................A.......... GGCCGGCTCCTGGGGCGAGATGCATCACCAGAACGA 1164851 35 100.0 33 ................................... ACCGACGCAGCCCTCAAATACCGTGCCCTCTCA 1164919 35 100.0 32 ................................... AAGGTGTCCAAGGAATTCCGCATCTCCTCCTA 1164986 35 100.0 33 ................................... CAACTTGCAGGATGCCAACTTGCAGGATGCCAA 1165054 35 100.0 34 ................................... CCATACGGCCCATTGCTCGGTCCGCCCGTCGTGA 1165123 35 100.0 33 ................................... AGTTCCACTTCGCGCTCGGCCTGGCTGGCTTAC 1165191 35 100.0 33 ................................... CGAGATCAGCGAGTACGGAGAAGCACATGCCTA 1165259 35 100.0 34 ................................... GCTCGCGAGGCCAAGGCAGCCTGCGCGGCTGCTT 1165328 35 100.0 32 ................................... TCGGCAACGAGACCGGAACCGGGATGTTGGAT 1165395 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 15 35 99.8 34 GTTTCAACAGCCTGAACGGCTATGGGCTGGATGAC # Left flank : GGGCTGGATGACTTCGAAAGATCAACCCAGCCAGCAACAAATTATGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGTTCCTGTTCGCAGATTACCAGCCATATCTGCAAGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACCCCATGCCATGGCGACCATGGGAGAATACGGTTGGGGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGGATCTTCGATTGAGATGGCCCATCGCCAAGTGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACCGATACAACGTGAGATAGTGAATGCTCACCACGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGATGACGGAGGCGATTCGCGTCCTCTTGGCGCGTCGGTGTG # Right flank : CGCTGCTGCTCTCATTCGTGGTTCCGACCACGTTGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGACCGCGTCTCGGGGAGTCCAAGTGATTCCCTATGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACTTCGAGAGCGGTTTGAGGCAGGGGAGACGGTTCGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACCCGCATGGGGCGTCGCCCTGGCGGCATGCATCGTGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACAGATTTCGAAGCCGCCTGCTCCTCTGCAGCAGAGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACTTGTCGAAGAGTCCGAGAAATCAATCCGACTGAGTTTCAACAGCCTGAACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAGCCTGAACGGCTATGGGCTGGATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 7 1165637-1166014 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 1165637 35 100.0 33 ................................... TTCGAGAGCGGTTTGAGGCAGGGGAGACGGTTC 1165705 35 100.0 34 ................................... CCGCATGGGGCGTCGCCCTGGCGGCATGCATCGT 1165774 35 100.0 34 ................................... AGATTTCGAAGCCGCCTGCTCCTCTGCAGCAGAG 1165843 35 100.0 33 ................................... TTGTCGAAGAGTCCGAGAAATCAATCCGACTGA 1165911 35 100.0 34 ................................... GCAGGGTGTGCTGTGGGCTGTCATACATGTTTTC 1165980 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 6 35 100.0 34 GTTTCAACAGCCTGAACGGCTATGGGCTGGATGAC # Left flank : AACGGCTATGGGCTGGATGACAGTTCCACTTCGCGCTCGGCCTGGCTGGCTTACGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACCGAGATCAGCGAGTACGGAGAAGCACATGCCTAGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGCTCGCGAGGCCAAGGCAGCCTGCGCGGCTGCTTGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACTCGGCAACGAGACCGGAACCGGGATGTTGGATGTTTCAACAGCCTGAACGGCTATGGGCTGGATGACGCTGCTGCTCTCATTCGTGGTTCCGACCACGTTGGTTTCAACAGCCTGAACGGCTATGGGCTGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGACCGCGTCTCGGGGAGTCCAAGTGATTCCCTATG # Right flank : CAGCCCTGTGGAAAAACGCCTCTTGACCAACGGCTTATGAGCCGATTCGGCGACTCGCGAAAAATCCCTTTTGGCGCAGCCCGTTCACCCGAGTCGGAATCAGCTCGTAATGGCTAAGCCGTTGATTATGGATGCGCGGCGACTCAGAACTCAAGCCCAGTTGCGAAAGCGCCTCCAACGGCTTGAGGATAGACGACTGTGTTGTTAAAGATCAAGGGGTCGGTGACCGGGACTGGATGAGTCGCCGGGCCGCAGGCATCTACAGGATCACGACCGCAGGAAAATCGGCGATCGCGTTGCCGTCGAGCGCCGATGAGGATTGACGACAGGATGCACAGATGCGGTAGAAGCGAATGTCGTCATCGTCACCGACGAGGGTTCGGAGATCCGCACGTAACGCCTCCAAGTCGTGGCGATCGCGAACGACGATTTCAAACACTGAACGCTGCACCCGGTTGCCGTAGCTCAGCAAGCGGTCGCCGACGCGGCGCCGCAGCCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAGCCTGAACGGCTATGGGCTGGATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 8 2425322-2424566 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2425321 37 100.0 35 ..................................... TTTGTCAAGCCATCCGGTGAGTTTCAGACCTCCAT 2425249 37 100.0 34 ..................................... CGGTACTGCATCAGGATCTCATCGAATGTCATCG 2425178 37 100.0 35 ..................................... GACATCAACCCGCCAATGACGCCCGGTCAACGGGC 2425106 37 100.0 34 ..................................... CCGATCATGCGGGCTGGGAGATTGCCTGTCTCGG 2425035 37 100.0 35 ..................................... CTCCCCCAAGTTTCGGACCTTTCTCAACAGTTTAG 2424963 37 100.0 34 ..................................... CAGCAACGCCCGCACGATCGACCCGACATTGAAG 2424892 37 100.0 36 ..................................... ACCGTTTGGAAGCGCTATGTGTTGGACGAGCCGAAT 2424819 37 100.0 36 ..................................... CTCCGACGTGGCGCCCGAGCCGTTGTGCACGTAAAG 2424746 37 100.0 35 ..................................... AAAGACATGCCCAACCTGCGCGTGTGGCGGCACGC 2424674 37 100.0 35 ..................................... ATCGCGAACCCGACAGGCAATCCGCTGTTGGTTTT 2424602 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 100.0 35 GCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAAC # Left flank : CTATCTCGCCAAGTGACGGAGTCTTCGCCTGATGCTCATCATCGCGACCTACGATGTCTCCACGGAAACCCCCGAAGGCCGGCGTCGCCTGCGCCGGGTTGCCAAAGTCTGCGAACGTGTCGGACAGCGCGTCCAGAAATCCGTTTTCGAATGCCAGGTCAACCAGATGCAGTACGAAGAACTGGAGCGGGCGCTGCTTGCAGAGATCAATCAGGAAGAAGACAACCTACGTTTCTACCGACTTACCGAACCCCAAGACATACACGTCAAGCAGTACGGAGTCTTCCGTTCCGTCGATTTCGAAGGTCCTCTCCTCGTATGACGCGCGAACCCGGAGCAACGGCGAAAACCCGGCAGGTTCGCGCGCCGTTTAACCTGTTGTTTTCAAGAGATTTTGAAAGCGCCCTCCAAGGCTCCTATCAACCTCCAGTTGCCTCGTCCGGCAGAATCGCGCAAGCTCGCTTTACTGCTTCGCAGAATCAACTGATTGCATGCGCGGA # Right flank : GAAATTCTCGGCTGAGAGTTCTTGCCCGGCATGCGCATCGCCCGGCCAATTGGCCGGGCGCGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAACAGCTCCGGCGCCTCGGCCGCCGAAGACGTGACCGGGCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAACGACAGGCCCTCGCCTATCTGCGCAACGCCGAAGGTGGGCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAACGGCAGAGTAGTCAACCCGGAGTCGTGGCGATCGTGCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAACCCCGTAAGCCATGCCCTTGTTCCATGGCGCGGATCGCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAACGACGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATCGCCCGGCCCAACGGCCGGGCGCGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-19.40,-19.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 5069972-5069333 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848257.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5069971 28 96.6 32 -............................ GCGCCGCGTCCGCCCGGAAGCCGAATCGACTT 5069911 29 100.0 32 ............................. GTTTGCAGCACCTCGCCGCGGTCGTAAAGCTC 5069850 29 100.0 32 ............................. GCCAGGAATACCTCGAAACCGTCGATCTTGCA 5069789 29 100.0 32 ............................. CTCTTGCCCGGCATGCTGGAACGAGCGCATAG 5069728 29 96.6 33 ..............A.............. TACATCCGCAAAGCCCTGTAGTAGGAGGCAAAT 5069666 29 100.0 32 ............................. AAATCACCGGCTGGCTACAGCTCGTCGGCGCA 5069605 29 100.0 32 ............................. TCTAGTTTCTGGTGTTGCCGGTGTATACATTT 5069544 29 100.0 32 ............................. CTAGCCATCGAAGACGAAGGAAGTTTGGAGTG 5069483 29 100.0 32 ............................. CCGTCTTCGCGCCAAGGCCCGATGACGGAATA 5069422 29 96.6 32 .C........................... ATCACCGGGATGAGCGGGCAAGACGCTCTGGA 5069361 29 86.2 0 ................A..CA...G.... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.8 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : | # Right flank : CGGAACTGAGGGAATGACATTCCGCGTCATGTAATCCCTGCGTGCACGGCGATAGTCGCCATCATTCCCACCACTTCTCGCCGGATTCCGCCCGCAATCGCTCTCCGAGATCCGTTGCACCGGCAAAGTCCGGTGCCTCCTCGTCTAGCCCATCGAAATCCTCGGCGATCTCGATCGCCTCTCGGCGAAGTATCGGGTTGCGATACCCCGCTGCCGCTTCCGCAACATATTCGGCGACGAATCGCTCACGATCGCGCCGCGCGACCGATCGCGCGATGGTCTCGAGGACGATGTCGCAACGAGACCGCCAGGTCAATCGAGCCCCCAAACCAACCTTTCACTCCAGGTCACCGGACAACTGCACATGAGTGAAGACCCTCTCGTTTCGACGCTCACAACCAACGGATCGGGGAACAACATGGCGTCATTCAATCGTCCCAGTTGGGGCCGACATCGGATAACGGCTTCCGGGGCCGAGGCCCGAGCCAGTGTCCAGGCCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 569-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848290.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 568 28 100.0 32 ............................ TTCCGGAGTGGTACCGGGCGGCGGCTTAGGGT 508 28 100.0 32 ............................ TCGATACCGACGGCCCGCTCGGCGATCCCGAC 448 28 100.0 32 ............................ CTTCAGGGCGAGCGCGATCTTGGCTTTCTTGG 388 28 100.0 32 ............................ TCTCGCATCGCCAGGCGCCGACATCTCGCCCT 328 28 100.0 32 ............................ ATCAACCCGGTGATGCTCGGAGACCTGCGACC 268 28 100.0 32 ............................ ACGCCCAAAAGGCGTGTGTCCCGGACTGCAAC 208 28 100.0 32 ............................ GCTCGGGTGCCGGACCTTTTTGCGGAAGAGCG 148 28 100.0 32 ............................ TCGGCGCGCTCCACCAGGAGGCCGGCCGCCTT 88 28 100.0 32 ............................ AGATCGCAGACCGCGCGCAGCCGCGCCTCCAC 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CCGCATAGGCAGCTCAGAAATTGAGCGGCTGCATCTCGGTGGCCGTCAGGT # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 42-560 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848292.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42 29 100.0 32 ............................. CCGCGGCGAACCTGTTCATCCCGGCCGGTGCG 103 29 100.0 32 ............................. AGGTTAATCCCTTTCGGGTCCGGTACTGCATC 164 29 100.0 32 ............................. CCATCAAACTGGGGCTATCGCGCTCGGCTTAC 225 29 100.0 33 ............................. GACAATCAGCGTGCCGCCGGGCAAATCATGCAG 287 29 100.0 32 ............................. CGCAAATCATAGAGATCCGACAACAGATCCCG 348 29 100.0 32 ............................. CCGGCATTGGCCGCAGGGCATCTCAAGCGGAC 409 29 100.0 33 ............................. ATCGTCGGAGCAATGGGCGGATATCTGCGAGTC 471 29 100.0 32 ............................. GCTCATGCGTAGCTTGCCAAGGTCAGATGAAT 532 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GATGAACCGGCATCGTCCACGCGCTTGACGGCGTTCTCCCAG # Right flank : CCGAGTTTATGCCGCTCGGCGATCATCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43-492 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN848298.1 Thiocapsa sp. KS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 43 28 100.0 32 ............................ TTCGAGGGCATGACAAACCCAGGCGTCAGCCC 103 28 100.0 32 ............................ GATGCCGGCGACCCCGGTGGGCTGGTGGCGGT 163 28 100.0 32 ............................ GTAGAGGCCGTCCTCGCGCCACTCGAGCCCCG 223 28 100.0 32 ............................ ATCAAGCGCAACCATGGGGCCGTCTACGCGCT 283 28 100.0 32 ............................ TACGCGTCGAGTCACTTCACCCTGACCGACGC 343 28 100.0 32 ............................ TCTGCACCCGCCCGCGCGCCGTCGTCAAGCTC 403 28 100.0 34 ............................ AGTTGCAGCGCCTCGGGAGAGACCTCGGCAGCGT 465 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AGCTCAGAAACGCCACCCGCGCGCACGCTGAGCCACGGCAGCG # Right flank : TGATGCGGCGCCCAGATCGTCGAGACGGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //