Array 1 15394-16641 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEB01000009.1 Salmonella enterica subsp. enterica serovar Augustenborg strain BCW_2642 NODE_9_length_140120_cov_2.5022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15394 29 100.0 32 ............................. AACATTGTCATAAATTTTTTTCAGTCGTTGGA 15455 29 100.0 32 ............................. ATGATTTTGGCTTTTTCCAGCCATCAGATATT 15516 29 100.0 32 ............................. AATAGCGGCAGGGGGTACGAGGGTTATTTTTT 15577 29 100.0 32 ............................. GCAGTTCGGAGACCAGGAATATACCGCCGCAC 15638 29 100.0 32 ............................. CCGACTCATATCAGGTAGCGTGCGCTAACGCT 15699 29 100.0 32 ............................. GAACAATGGCTGACAGAAGCTGCGGAAACGTA 15760 29 100.0 32 ............................. CGGTTGCTACCGAACTGGAGCTGTGGGCGCTG 15821 29 100.0 32 ............................. CACTGGATTTGAATTATTTATTTCACTTTCAA 15882 29 100.0 32 ............................. GACTCGGTCTGTTTTTTGATTTTGGCAATCAG 15943 29 100.0 32 ............................. GACGTCGCTATTGATCGGGAAAAGGAGCGTCG 16004 29 100.0 32 ............................. ATCCGCTCCATGTCTTCGGGCAGTTGGCTACA 16065 29 100.0 32 ............................. CGCATTATGATAAAGTTCCCGCCCGTAACTCA 16126 29 100.0 32 ............................. TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 16187 29 100.0 32 ............................. AGATGGTAAAGGTGCTGGTCGCCGCGACTGCT 16248 29 100.0 32 ............................. TCGAAACTACGCACGCCGTGTGCCGTGGGGAG 16309 29 100.0 32 ............................. GCCAGCGCTGGCGCGCTCGCGAAATGGGAACC 16370 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16431 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 16492 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16553 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 16614 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32938-34004 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEB01000009.1 Salmonella enterica subsp. enterica serovar Augustenborg strain BCW_2642 NODE_9_length_140120_cov_2.5022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32938 29 100.0 32 ............................. AGGACATCGGGTCGCGGGTTCAGATTATCCAG 32999 29 100.0 32 ............................. ATATTGATGTAATGACGCGACTTTGCACCAGT 33060 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 33121 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCATTC 33182 29 100.0 32 ............................. CGCAAACAAGACTGGCAAATACAATTAGGTGC 33243 29 100.0 32 ............................. CTCGACGGCGACCCAACGCAACTACCAGATCA 33304 29 100.0 32 ............................. AGTTGGATAAAGAGGCGCAGGAGAGAGAGCAG 33365 29 100.0 32 ............................. CCAGGTTAACAACTGCCAGATATTTGGCGTGC 33426 29 100.0 32 ............................. ATCGTTGTCGTTCGCGTGGCTGAGGGCGAGGA 33487 29 100.0 32 ............................. CAAATACGTATACCGATAATGCATCGGCTCAA 33548 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 33609 29 100.0 32 ............................. ACCAATAACAAACTAACAGGTGTAGAGCACAA 33670 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 33731 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 33792 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 33853 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 33914 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 33975 29 93.1 0 ............TC............... | A [34002] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGAGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATAGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //