Array 1 806-2029 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QLQF01000044.1 Streptococcus iniae strain QMA0373 NODE_8_length_60623_cov_134.112_ID_6611, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       806	    36	 100.0	    30	....................................	AAGCGGAACAGATGACAATATATGATTTTT	
       872	    36	 100.0	    30	....................................	CCTCACCATCAGGCAAAGACCTTGATACCT	
       938	    36	 100.0	    30	....................................	CACCAGTAAGTGTCATCTGAGCAGTACCGT	
      1004	    36	 100.0	    30	....................................	TCCTTTTTGAGTAAAAGCTATTGTCTCATT	
      1070	    36	 100.0	    30	....................................	TATACGACTATAAACAGTTGCCAGCTTCAT	
      1136	    36	 100.0	    30	....................................	TATGGAAAATGTTGACTTCCACGGTAAATC	
      1202	    36	 100.0	    30	....................................	GTTTGATGATGTTGTCTATACAAATACTGA	
      1268	    36	 100.0	    30	....................................	TTTGATACGATCTATGTCAGCGAGCATTTG	
      1334	    36	 100.0	    30	....................................	GTTTTAGCTTTTTTAAATTCTTCTTGCTTC	
      1400	    36	 100.0	    30	....................................	GTGGCATTTTTGGAAATAGTTAGACAATTA	
      1466	    36	 100.0	    30	....................................	ACAATTATTTTATGTCAGATATTGATGAAT	
      1532	    36	 100.0	    30	....................................	GTGTTCGCCGAATAAGTAGAATTAAGAAGC	
      1598	    36	  97.2	    30	..........................C.........	CCTGCAAAAGATTCATATGCGATTAGTTAT	
      1664	    36	 100.0	    30	....................................	CAAGTCTTGCAACAACAAGTATCCACTACA	
      1730	    36	 100.0	    30	....................................	ATATATATCAATGGAAATACCAAAACGTTT	
      1796	    36	 100.0	    30	....................................	TTAATTCCTTGGTTGTCAGTGTAATAGATA	
      1862	    36	 100.0	    30	....................................	CGGTTTAGCTGCTCTTGAGAAGATTGTATT	
      1928	    36	 100.0	    30	....................................	TTAGTATTAAATATAATATCAACACCTTTA	
      1994	    36	  75.0	     0	................T.....TG..T.T.TTT..G	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	  98.5	    30	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   GTTTTTGCGCTAGGAAGTTAAGTAATTCTGTGGTAAACTGAGTCATGGGAATAAATCTCTTTCTAGTGAAGTGTCGTAACTCTACTATACAGGATTTATTCCTTTTTTGTGTTTACACAAGATATTTTACACTACCAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG
# Right flank :  GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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