Array 1 463621-462372 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVZ01000002.1 Pectobacterium versatile strain PB70 PB70LOC_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 463620 29 100.0 32 ............................. CAAAACGCCATTAATTTTATCCGGCAGTTACC 463559 29 100.0 32 ............................. CAGATGGTTGGTACCAAACCACCAGCCGCAAG 463498 29 100.0 32 ............................. AGGTCATCACACCTCGCCGCCTGCACGACGGA 463437 29 100.0 32 ............................. CACTTCTTGCAGAATTTGCTGGCTGGTGTCCG 463376 29 100.0 32 ............................. TCAAATCGGCGCTGGCCGTCCAGCTCAACGCC 463315 29 100.0 32 ............................. TGCAAATGGTCTATTCGCAAGTTGAACGCGCC 463254 29 100.0 32 ............................. GCATTGATTGATGAATGCCTGGCGGATTGGGT 463193 29 100.0 32 ............................. CTGCGCCGGGCTTACATTTTCGGGCAGATGTC 463132 29 100.0 32 ............................. CCTGGCCATCATTACCGCTAAAGCACGTAGTG 463071 29 100.0 32 ............................. CGATATAGAAATTATAGGCCGCGTTTTTTGGT 463010 29 100.0 32 ............................. CTTATTAAACGATTTGAGGGCTGCGAACTGGC 462949 29 100.0 32 ............................. TATGGAAACCGGGCAAATGCCTGTTATCTGAG 462888 29 100.0 32 ............................. CCGTTGATCTATCAAGAGCGTAAGAAGCCCGA 462827 29 100.0 32 ............................. CCGTATGGCTCTAAATTCCCAACGTTGGAAGA 462766 29 96.6 32 .............C............... GGCGACTTACCGGCTTGCGATTCTCGGGGTGT 462705 29 96.6 32 .............C............... GCAGATAAATGAAGGCAAGGCAAAAACGGCGC 462644 29 96.6 32 .............C............... GCATGGACTTTGCCGCACAGGCCGACGCTATC 462583 29 96.6 32 .............C............... ACGGCATTCTCTAATCGTTTTCTCAGGTATTC 462522 29 96.6 32 .............C............... CACGGTGCCTGGCGAAATCAGCGACCCTGCAC 462461 29 96.6 32 .............C............... TCGGGACGGCGTTTTTTCATCGCGCCCCCACT 462400 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCTGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 467493-465817 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVZ01000002.1 Pectobacterium versatile strain PB70 PB70LOC_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 467492 29 100.0 32 ............................. AGATCCCGGTTACTCAGGGGTGGAGATAGCGA 467431 29 100.0 32 ............................. CGGTTAAAATCGCCCAGGAAGGCGAATTTTTT 467370 29 100.0 32 ............................. GCAGACGAGATTATAAATGGTAAGCGCGATGC 467309 29 100.0 32 ............................. GCATTCCACCAGCTCCAGTGGGAACAGAAATT 467248 29 100.0 32 ............................. ACCTCGTTGACTGTTCGGCTGAGTGGCCTAAC 467187 29 100.0 32 ............................. ATAATCCTGATGGCCCGATACGACTACTGAAA 467126 29 100.0 32 ............................. CGCGTGATGTCCAATCTGCGCGTTGCCATGCC 467065 29 100.0 32 ............................. CGATGACTTTACGGTGTACCTCCTTGCTAAAA 467004 29 100.0 32 ............................. CACGTATGCGTTACTGTCGTCAGGTGACGCAG 466943 29 100.0 32 ............................. TATACTACGGCGATGAAAAAGATTTCTGGTGT 466882 29 100.0 32 ............................. AGATGGTGTTGTAGTAGATTTTGATGAACATA 466821 29 100.0 32 ............................. TCTTATGTAGATCTTGCCATGTCGCAGCATCC 466760 29 100.0 32 ............................. TCAATGCCTCGATCAGAGTTGACTTACCGCCA 466699 29 100.0 32 ............................. CCTAGCGGTAACGTTCCCCTGTACCCACATCA 466638 29 100.0 32 ............................. AGCTCGAATCATGGGTAAACGATATGCTTCAG 466577 29 100.0 32 ............................. AATCAGATAATGCGTTTCGCGTTCGTCGCAAT 466516 29 100.0 32 ............................. TCATCATCCATCTTGTATCCCTTATTATAAAA 466455 29 100.0 32 ............................. GATAAATTATTTTTCTATGCAATACATGATCA 466394 29 100.0 32 ............................. CGGTCGATTAATTAACCCTGCGGCATCGACGC 466333 29 100.0 32 ............................. GAGTTATTTGGTGATTGCTCTAAATCGGTTGA 466272 29 100.0 32 ............................. ACTAAATGAGTCTTCCAACATTTCAGGTCTAC 466211 29 96.6 32 ............T................ CTATTCTTGCTGAATCAGGTATCGAGGTTGCG 466150 29 100.0 32 ............................. CTCACTATGTGCGCGTATTTGGTAAACACGCT 466089 29 100.0 32 ............................. GTGAGGAATTATTCACGCCGGAGAATATTGCG 466028 29 100.0 32 ............................. GATATTCAATTGCGCTAGAAACGCAAAAGAAT 465967 29 100.0 32 ............................. GCTAGGATGATAGGCTTATCCATTATGCATCC 465906 29 100.0 32 ............................. ACATGGTGAGGTCTAAGCGATTCGATACCGGT 465845 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162930-163138 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVZ01000004.1 Pectobacterium versatile strain PB70 PB70LOC_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 162930 28 92.9 32 A..T........................ TGGCGTCACGTCAGCACATGCCGAAACCTCAC 162990 28 92.9 33 ...........TG............... ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 163051 28 100.0 32 ............................ TGAGAGATCAGCACTCCGTCGTCATCGTTGCA 163111 28 85.7 0 ...........T.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.9 33 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGTGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCCGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTCGTTGCGCTTTATTTCGCGCTCCCGCTGCATCTCTACCTACGTGAACCTCTCCCCTACTGCGCCTTCAGCCCTGACGGACAGCAGTTAAGTATCTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 172722-170472 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVZ01000004.1 Pectobacterium versatile strain PB70 PB70LOC_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 172721 28 100.0 32 ............................ AGATGCAAGGGGTTAGGCTAGCCGTGCTTTCA 172661 28 100.0 32 ............................ AGATGCAAGGGGTTAGGCTAGCCGTGCTTTCA 172601 28 100.0 32 ............................ ACGAAACCCTGGAACAATCCCCGACAGCAGTC 172541 28 100.0 32 ............................ TCGACCAGCTGGGCCGCTCCCAAACCGGTAAC 172481 28 100.0 32 ............................ GACTTCGGGCCTGTTGGTGAAGACGTTGTACA 172421 28 96.4 32 A........................... ATACACACGCGCCGCTACCGCCGCCAATGCTG 172361 28 100.0 32 ............................ TGAAACAGATTTGCCATCATGGTCAGGAATTG 172301 28 100.0 32 ............................ TAATGCCTACATCGTGGGCATTGTGAAATTAA 172241 28 100.0 32 ............................ TGCCAAGAATCACAGAGCGAACGGTAACAGAG 172181 28 100.0 32 ............................ TGTCGGTGGCGTGGTATTCTCTGGTGTTGGCG 172121 28 100.0 32 ............................ CAACCGACAGGTAATGACCGCAATCCCACTGT 172061 28 100.0 32 ............................ GGCGCGGGTAGCCCTGAAATCCAAGTCTGAAA 172001 28 100.0 33 ............................ GCAAAGGGAATAGCGCCATCGGCATGGGTCACA 171940 28 100.0 32 ............................ GCATAGTGTCGCGAAATCGCTAGATAGAACTC 171880 28 100.0 32 ............................ GTTTCTAAAACGGATTGATGAAGTACTGATCC 171820 28 100.0 32 ............................ TGTGATAATGCATTGCATGGTTGAAATTTTGC 171760 28 100.0 32 ............................ TACAAAGACATGATCGAAGCTGTTGGCAAAGA 171700 28 100.0 32 ............................ GTCACAATCTGTCGCCACTGCCCGTCACCGCA 171640 28 100.0 32 ............................ GGAATATATTAGCTCGTTAAACTCGGCATGGC 171580 28 100.0 32 ............................ GACTATGTAGCCCCAGCACTCGGCATGGAAAT 171520 28 100.0 32 ............................ AAAACCTGTCGCAGCGAAATCATCGCTCAGAC 171460 28 100.0 33 ............................ CTCGCGCTTCATGCGCGGGTCGTAATTAGCGAA 171399 28 100.0 32 ............................ GCTTGTAGCTGGCGTACGCCAGCGCCGCTCTC 171339 28 100.0 32 ............................ GATCCTCCGTGGTCATACCGTGACAAAGCGAA 171279 28 100.0 32 ............................ TGTATCAAATCCTTTAGCGATGGCGCGCATGG 171219 28 100.0 32 ............................ GCCGTTACCAACGTAAACCCCGCATCGCTCGG 171159 28 100.0 32 ............................ AGTGCCTCAGCGAATGGTGGAGGAACAGCGTT 171099 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 171039 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 170979 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 170919 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 170859 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 170799 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 170739 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 170679 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 170619 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 170559 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 170499 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATGAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGATGGCTGCAGAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 181673-182239 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVZ01000004.1 Pectobacterium versatile strain PB70 PB70LOC_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 181673 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 181733 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 181793 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 181853 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 181913 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 181973 28 100.0 32 ............................ GACATCGTGGTGACGCGCACAGTGCGTAGATT 182033 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 182093 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 182153 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 182213 27 82.1 0 ...........T.C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGACCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : GCTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACTGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCAGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //