Array 1 574009-577549 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020833.1 Listeria monocytogenes strain CFSAN004330 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 574009 29 100.0 36 ............................. ATTGAAGCAAGACAGCGACGTGGTTTCTGCAACATT 574074 29 100.0 35 ............................. GTCAAATTGCTCATTAAAATAAAGAGGGTTAGTAA 574138 29 100.0 37 ............................. TGTCATTTCTCCTTCCTTAGAGTTTCTTTAAGCTGCA 574204 29 100.0 37 ............................. CTAACCAGAAAAAGAAATTAGCAAGACCATTTAACGT 574270 29 100.0 37 ............................. CAGGTACTCTATTCTTTTTTGCTTGTTCATAATTCTT 574336 29 100.0 36 ............................. CGCATATATTCGGCTGAATGTGTGAACCACCCAAAG 574401 29 100.0 36 ............................. AGGCGCAGGGCAATTTTTACCAGTGACGTCATAATG 574466 29 100.0 36 ............................. CTTTATCATTTACAGAAGCGTCTAAGCCCAGCTTGT 574531 29 100.0 36 ............................. ATTTAATCACTCCTTTCTATATATTTTCATAATTCC 574596 29 100.0 36 ............................. TACCATGGAAGAAATGGCAATATCACCGCGTTCTTC 574661 29 100.0 34 ............................. AAGTTATTCACTCCTATCTTTCGATTCCTAAAAA 574724 29 100.0 36 ............................. ACACAAAAGATGATTTACATAACCAAGAAATCCAGC 574789 29 100.0 36 ............................. TTATTCATTGCTGTTTTAGGCGTATTTTCTTTTTTT 574854 29 100.0 34 ............................. AAAAATATCCTTGTTAAATTGACGATTTAATGAG 574917 29 100.0 37 ............................. TTATAAATCCTCCTTCATTCAATTAGTTTACAATTTC 574983 29 100.0 42 ............................. TGTTGTTGTGATAAAGTCATTCCTGCTTGACTTACTGTAGTT 575054 29 100.0 36 ............................. CAATAAACGGCTCTGTATAATAAGCTGTTAAAACAC 575119 29 100.0 37 ............................. TTCGTATTCGTAAATATCATTAACTCCAAAAGCGAGC 575185 29 100.0 34 ............................. TCAAATGCTTTTATCGTATATGATTCTACATTAG 575248 29 100.0 37 ............................. AGTAGAGCGTAGTGCCGATGTTCCATAGAAGTAACCA 575314 29 100.0 36 ............................. GTTTGTTGTAACAGGCACAGCGAGCGAAACGGAAAT 575379 29 100.0 33 ............................. AAAAAAGTAAGGAATGGTACGAGCAAGAATTAA 575441 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 575506 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 575569 29 100.0 37 ............................. AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA 575635 29 100.0 34 ............................. AGAAAAAAAACATCTTTTCAATTTGTTGTTTTGC 575698 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 575764 29 100.0 35 ............................. TCGAATCAAATAATTTTAAAAGCTAAGCAAACAAA 575828 29 100.0 36 ............................. CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA 575893 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 575957 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 576022 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 576088 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 576153 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 576217 29 100.0 37 ............................. CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT 576283 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 576349 29 100.0 36 ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 576414 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 576480 29 100.0 35 ............................. TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT 576544 29 100.0 34 ............................. ATAAATTATCCGTATGTTCTTGAATTGTTTCTTC 576607 29 100.0 36 ............................. CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA 576672 29 100.0 34 ............................. GTGCTTTTCGAACATCTTTTTCTATATCTACATG 576735 29 100.0 36 ............................. TCAGTTTGGTTCCAGCAGACATTACAATTCCTTGTA 576800 29 100.0 37 ............................. ATATTACTATTTGAAAAAGTGCGATCTGTCACAATTA 576866 29 100.0 35 ............................. TACGATAATACGAGTTTTTCAATAGGCAGACCTCC 576930 29 100.0 37 ............................. TTAGAAGCGGGACAGAAAAGAACTTTTCAAGATGTGT 576996 29 100.0 36 ............................. GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG 577061 29 100.0 37 ............................. GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC 577127 29 100.0 36 ............................. AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG 577192 29 100.0 35 ............................. TTTATTGTCGATAAGCTCATGACAGATGAATCACT 577256 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 577321 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTTCGCATCTGGTACAA 577388 29 100.0 37 ............................. AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC 577454 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 577520 29 93.1 0 .......................A....C | C [577543] ========== ====== ====== ====== ============================= ========================================== ================== 55 29 99.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2712463-2711436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020833.1 Listeria monocytogenes strain CFSAN004330 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2712462 36 100.0 30 .................................... ACAGCTTCCTTTCTGTTATATTTTTCACAA 2712396 36 100.0 30 .................................... CATAGGTAGAATAACCATCAACTCCGCTAG 2712330 36 100.0 30 .................................... AATAGGATATTTATGTTGGCGCATATCTAA 2712264 36 100.0 30 .................................... TGCCAATAGTGGTGCCCACTCAATCAAAAC 2712198 36 100.0 30 .................................... AAAAATGGGGCTTACCGCAAAGTCGTTATT 2712132 36 100.0 30 .................................... ATTACCAAAAAAGTACCCACCGATTTTGGC 2712066 36 100.0 30 .................................... CTGGAAAATCAAACAGTTAGACGACGTTTG 2712000 36 100.0 30 .................................... TCCGACAACATGCGAGGAACAACTAGAACA 2711934 36 100.0 30 .................................... GATTCTTTCCGAGATTCCACGTGTAGAGGA 2711868 36 100.0 30 .................................... AACATAGGTAGAATATTTACGCATCTCCTG 2711802 36 100.0 30 .................................... CGAGCGGCGTTGGTATTGACCGTAAAGCGC 2711736 36 100.0 30 .................................... ACTTTATCAGTCAGACACGCCGAACGAGCT 2711670 36 100.0 30 .................................... TTAACAAAAAAACCTGTTTGTCCAGTTGTC 2711604 36 100.0 30 .................................... TCCGACAAGGAAGATCCGTTCCCGACTTTG 2711538 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 2711474 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2711439,2711442,2711447] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //