Array 1 5981-2408 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLA01000115.1 Myxococcus sp. CA010 NODE_115_length_28168_cov_45.576_ID_6400, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5980 36 100.0 34 .................................... ATGCCCTTGGAGACGGAGGTGGGCTGCGCGGTGC 5910 36 100.0 35 .................................... TAGGCACCCTGCAAGTGAGGCCATATGCTTTTGTA 5839 36 100.0 34 .................................... TGCCTAGCAGCTTCGAGCGCCCACGGAACTTGCG 5769 36 100.0 38 .................................... CTCACGGTCATGAACACGGGAACCCTGGATGACCTGCG 5695 36 100.0 34 .................................... TCGTAATAGGGCCGCAGGACGCCAGTTTGATGCG 5625 36 100.0 35 .................................... GTCGAGGCAACCGCCGTGGAGAGGGGATTGGCCTT 5554 36 100.0 36 .................................... TAATAGCCCATCGCTGCGCTGACCATCAGCGTGTAG 5482 36 100.0 35 .................................... CGCTTCACGTGGTAGATGCGCAGCTCGCCGCCGAG 5411 36 100.0 39 .................................... CTTCTTCATGGTGCTCTCTGGCGGCTGCGAGGTGAGATG 5336 36 100.0 34 .................................... TGTTGGCCTCTGCCCTCTCTGACCTCTCATGGTC 5266 36 100.0 36 .................................... GTGTACGGCGCGGGCGTCGATGCGCCGAGGAGCACG 5194 36 100.0 33 .................................... CGGCCGGATTCGTCCCGCTCCAGCTCGCCGGGC 5125 36 100.0 38 .................................... ACGTGCAAAACGTCCTGAGGCTGATGCGCAACTTGCAT 5051 36 100.0 37 .................................... AAGCAGAAGGCCGCGGCCGCGCGCGCTGGCCAAGGTC 4978 36 100.0 37 .................................... CCTAAGTAGATGCCCATCTCCGGGTGCACCAGCAGGT 4905 36 100.0 33 .................................... CACTACATGGCCGCCAAGGAGGCGCTCTTCGAG 4836 36 100.0 35 .................................... ATGGGCTGTCGCTGGGTGTCGTCGCGTATGACGGT 4765 36 100.0 42 .................................... ACAGCCTTCCTTGGTCGTGGTGCGCTGGCGGTGTCTCTTCCA 4687 36 100.0 37 .................................... TCAATGATTTCTCATACCCCCGCCATCTCTCTGTCTA 4614 36 100.0 41 .................................... TAGCGCCTGCTCTCCCCTGCACGGTGCGCCGCCGCCTCGGC 4537 36 100.0 41 .................................... AGGTCCTTGGTGCCGTTGGGAAACGGCACGAGGGTATTGAG 4460 36 100.0 39 .................................... GTAAATGAGGCTGTAGCTGCGGGCCTGGGTGTCATTGAG 4385 36 100.0 33 .................................... GAGTCCAGGACGCTGTAAACGGGCTCAACGTAG 4316 36 97.2 37 ..........T......................... CCGCCGTAGGGCTTCGGGCCGACGACCCAGAGGGAGT 4243 36 100.0 36 .................................... CCTCCCTTAGCGAGTTTCCACCTCTCAAAATCCAAG 4171 36 100.0 37 .................................... AGCCAAGGGCTCTTCACGCTCCAGCCGGGGCGCTTCA 4098 36 100.0 35 .................................... GTGCGTGTGGCCATCGCGATCCCCGAGGACGGGAA 4027 36 100.0 35 .................................... TTGCAGTTGGCGCAGTACTCCGACGTCAGGCTGTC 3956 36 100.0 36 .................................... TGACGGAGTACGTAATGTAAGGGATTGCCTTGTACC 3884 36 97.2 37 .........................T.......... CGGTTGGCGCTTGGGCCATGGGTAGCTTCTGGTTCCA 3811 36 100.0 37 .................................... CGGTAGTCCGCGGGGAAGTCCATCGCGCGCTGGAGCT 3738 36 100.0 36 .................................... ACGTCCTCACCGGTCATCAGCCTGTTCCGCGCGATG 3666 36 100.0 34 .................................... GCCCGAAGCAGCGGCAGCTTAGGGTCATTGGCGA 3596 36 100.0 35 .................................... TGTATTGTTCAGCGTCGCCATACGCATCAAGCGGA 3525 36 100.0 35 .................................... TCGAGCGGCGACGTCGTCGGCAACTGCTCCGCCGC 3454 36 100.0 39 .................................... TTCCCTGATTTCAACATGGGCACCTATGAGGAGTGCGCT 3379 36 100.0 36 .................................... CGTTCACCCCCGAGGTGAAAGCCCCGCTGAGTTGAT 3307 36 100.0 38 .................................... ATACGTCTCCTCTGTTGCTGTGGATGTGGCCTAGGACG 3233 36 100.0 34 .................................... AAGGAGCACATGAAATTCACGGGCAACGACAAGG 3163 36 100.0 37 .................................... CCCTTGACGGTGGTGCTGTTTACGGCAACACTGAAGG 3090 36 100.0 35 .................................... CACTGCTTTTGTCTTTCTGTCAGGACCTCGTAGTT 3019 36 100.0 36 .................................... GATACGCTCCAGGCCACCCCGCATCGCAGCCACCTC 2947 36 100.0 39 .................................... ACAGACTCCACGTCGGACGGGAGGGGCAGCTCGTTGAAA 2872 36 100.0 33 .................................... GAAGAGGAGCTGCGCGCCGCGCGGGAGATTATC 2803 36 100.0 36 .................................... CCATGGCCAGCAGGCATCGGGAGGCGCGGGCGTGAA 2731 36 100.0 34 .................................... CGTTCAACCGCGAGGAACGCGCCGTCAGGCAACG 2661 36 100.0 37 .................................... TAGTTGGCGCGGTCCTGCGCAGTCGGAGTGGTGCTGG 2588 36 100.0 36 .................................... CGTCCTTCCAAGTCATCCACGACGCGCTCTGCCGTT 2516 36 100.0 37 .................................... GTGAAATCACGGAGTCGGGAAGCAGCATCCGCCAGCG 2443 36 97.2 0 ........................T........... | ========== ====== ====== ====== ==================================== ========================================== ================== 50 36 99.8 36 GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : TGGCGTGGGTGGAGGCCCGGCGCGCGGACAAACTGGAGCAGAAGCAGGTGTTGGCTGTTTTCGAGACGGATTGGCTTTCGCGGCTGGTCTCCCTGTCCCCCGAGGCTCGCGACGCTGGGGCCAGGGCGCTGCGGTCGCTCGTCAAGAGCCCCAAGCTCGAAGCGCGAAGGGATGCGCTGCTCGCCCGGATGGGGACGGACGTGGAGGGACGCTGAGGGACCTGCTCCCCCCCGTGTAGGGGCGCTGTATGATGAATGACATTCAAGCACCTCGCCGTGGCGGAGGCCCGCGCCCTCGAAATGGACGATTTCCCCTGTTGTTTCGTGGGGTTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCTGAGTGATTCCATGGGGTTCGGATTTCTGGGTAGGGTCCGGGAGGCACAACCCTGGCGAAAGCGGGGGAGGTGCTTGAAAAGGGGGGTGGTAAGTTGGCGGAACTGCTGGGAGATTCAGACGGGCA # Right flank : CCAGGGGCGGGAGTCGAACCCGTACCCGGGAGGAGCGAAACCCCAGCAGGATCGCGCCCTTTCCTCTCAACCTCCTGGACTGCGTTGGATTCGACCTCCCGCCACATCCCCTGCCGTCCCGCCCTGTTCCAGCGCGCTCCGCAGGGGCATGCGACACACGTGCAACATGGCGGGGCCTGAAAGAGATGGGCTTCAACCCGCCTAGAGAGAGGCCGAGTTGCGGATGGCTCGGCCCCTCTTGTTCCTACGATTGGTGCTGGAGCGGCTCCAGTAGCCCCGCGCCGTCCAGCACTTCACGCACGCGGTCAGCAAGTGCCACGTGTTCTGGGTTGCTGACCGTGAAGCGCTCGGGAGTGAGGACGATGAGGGTCCCTTTGTCTCCCACGGGTTCGATGTGGACCGGAGCGGGGAGGGGAGGAATTGTCCCCCGGTGCTGGGCCAGGTACGTCACCCACCCGACGTATGGCGATTTCGGGACGCGCCGAGCCTCAGCAATATCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 56421-53156 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLA01000026.1 Myxococcus sp. CA010 NODE_26_length_85926_cov_49.721_ID_6222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 56420 36 100.0 35 .................................... TCGTGGGTGTCGCCGTGGCGCATGGCCGCATACAA 56349 36 100.0 36 .................................... ACGCTTCCGGGTATTTCGACCTCGAAGGCTCCCACA 56277 36 100.0 35 .................................... GACAGCGCCTGCCCGTCCTTGCCCGCCACCTCGTG 56206 36 100.0 34 .................................... TACTTCTCAATCGCTTCAACCAGTTCCTCCCCAT 56136 36 100.0 36 .................................... ATATGGAGAAGCTTTTCTCGAAATTTTTCCGGGCTC 56064 36 100.0 37 .................................... TTACGGCCTGCGCTGGGCGCATGGTGGCCAGCGAATG 55991 36 100.0 34 .................................... CGGTCATCGGTCGTGTCGTAGCCGGTCAGGCGCT 55921 36 100.0 35 .................................... AGCCCGCTCTTCTCGTGCATCGCGAGGGCCCCAGG 55850 36 100.0 35 .................................... TTGTGGGCCATGGTGAGTTTCCTTTGGGGTTGGGT 55779 36 100.0 34 .................................... TCGAGTTCCGCCGACGCCTTGCCGTAGGCGACAT 55709 36 100.0 35 .................................... AACTCCACCGACTTCGAGGGCCAACCCGACTGGCT 55638 36 100.0 39 .................................... CAGCAAGCTTTGCAGTGCGGAGAAATGCCGGCGGGAATA 55563 36 100.0 35 .................................... GCCTGACCCGGCTCAGCCGTACGGGCCGTTCCCGG 55492 36 100.0 36 .................................... ACTAAGCGCAAGCCGGGCAGCAATAGACCGACTATC 55420 36 100.0 34 .................................... TAGAGGCTGAAGCGGTTGCGCTCGCCCGCGTTGA 55350 36 100.0 36 .................................... GCACGAGTCCTCGGACGGAACAGCGCAGGCGCCTAC 55278 36 100.0 34 .................................... TCTCCCCTCGCCGCAAGGCAGGGGCGGTCCTCAA 55208 36 100.0 35 .................................... GAGGGATTGCGACACGTTGCCCGTCCTGGGTCCAG 55137 36 100.0 35 .................................... AGGATCGCGTAGAGCACAGCCACCATCTCCTCCCG 55066 36 100.0 38 .................................... TGTCCTGGCGGAATGACTGCATGAACAACCCCATTCCG 54992 36 100.0 39 .................................... TCCTGTTCAACGTCGCCCGTCGCCATCACGCCTCCTAGG 54917 36 100.0 34 .................................... GCAACTGGCGCGGACTGGCGTAGAAGGAGTCCAG 54847 36 100.0 36 .................................... CCGAGCAGAACCCCGGGTAGTTGGCCTCTACGACAC 54775 36 100.0 36 .................................... TCGGAGCGCTGGCCGAAGTAGATGGTGACGTTGAAG 54703 36 100.0 38 .................................... GTCCCGCCAGCACGGGGCGATTGTCACCACCTCGGACG 54629 36 100.0 37 .................................... CGTCGGCTGCGCAGAGGGGCTGTGATGGCGGCAGTCA 54556 36 100.0 41 .................................... CCGGAATAACTCAGCGCCTTGAGTACACTTGGGTGGTCCGC 54479 36 100.0 37 .................................... TCCTCCGTCACCAGGGACAGCGCCTCCAGCGACACCT 54406 36 100.0 37 .................................... CCCTAGCAGGTACCACGACGCACTGACACCCCATGGC 54333 36 100.0 36 .................................... TCCCCCATAGGCTTCAGGGAAACGGTCACGAAATTG 54261 36 100.0 33 .................................... TTCCTGGACCCCGCTGGCGCCGCCGAGGTCAAC 54192 36 100.0 36 .................................... AAGGTAGTCACGGCTGCGTCGAGCAGCTTGGCGAGT 54120 36 100.0 33 .................................... GTGATGCGCCGACGCAGCGCCTCTTCTTCACAA 54051 36 100.0 33 .................................... TCCTTCCGCAGGCGCACCAGACGTTGCAGCGGC 53982 36 100.0 40 .................................... ATGCTGTCGAGTCGCGACAGATCTCCGGCGCCGATGGTAC 53906 36 100.0 34 .................................... TCGTCCCGTTGCACGAGATCCGCGACGAGGAGAA 53836 36 100.0 36 .................................... CTGACGCCCCTCCAGTCGAAGAAGGGAACGAGCGTG 53764 36 100.0 37 .................................... ACGTCGGCCACCTCCCCAAATGCGTCAGCCGTCGTCT 53691 36 100.0 35 .................................... GCGGCAAATCCTCGCGGACGTGGCGCTGGAGATTC 53620 36 100.0 36 .................................... AGCGGTGAGTGCGCCTGCGTCGTGCCGTCCTCCAGG 53548 36 100.0 35 .................................... GCCCGGAACCGACGCGAGCGCCGCCAGGCACAGCA 53477 36 100.0 36 .................................... CCGGCCTGGGCGGCCTGCACGCGACCCCCAAGGGCA 53405 36 97.2 37 ...........T........................ GTGACGCCGTCCGCCGCCCAACCCTCCAGTCCGCAGT 53332 36 100.0 36 .................................... AACCGCTCGCTCTTGGTCATCTGGGTCATGGTGACC 53260 36 91.7 33 ...TT....T.......................... TCCTTCCGGCAGTCGCAGTTCCAAGGCTTCATA 53191 36 88.9 0 A.............................C.A.G. | ========== ====== ====== ====== ==================================== ========================================= ================== 46 36 99.5 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGACCCGCGGCGGTGGCGGAAGGTGTATGCCCTGCTGAAGGGATATGGGGAGTGGTTGCAGCTCTCGGTGTTCCGTTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGATGCCGTGGATACGTTGTTAGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAAGCAGGCGACAATCAAGCACCTCGCCGTGGCGGAGACCCGCAGCGGCGAAAACGGCGGATTCCTTTGTGATTTCATAGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATAGGGTTGGTGATTCTGGGTAGGGCCTGGGACGGCCAACCTGCGTGAAGGAGGGGGAGGTGCTTGAAAAGGGGTTTGTAAGGTGCTGGAATTGCTGGGAGATTCAGGCGGGCA # Right flank : GTTGGGGGCGCGTCTGGGCGTTTGCACTGGCCCCTCGGAAGGGTGACCGCGTGACGGGGCCTCCAGCCGTTCCTGAGCGGCGCTGGGGCCACAGCCCCATTACCGGAGTCCCCGGAACGAACACCCACAAAGTGCGCAATCCCTAGTTGGTCGGAGCGGTGCTTGGGGGTAATTGACTGTGTTTGTGTCAACATACGCGCAGGCTTGGTAGGATTGTTGATGTTGCGCAGAGGTCTTGTTGCTTGCCGCGAGTCGCCAATGGAATTTCAAAAGAGATAGGCTTTCGCCCATGGCCAATGCCGTTGGCGTGAACAAGATGTCCGTTGTCACCAAGGACTCCAATGGTGTCACCGTCGCCTTCCCGGACGTGTGCAAGACGCCAAGCCCCGCCGGGCCGATTCCCATTCCCTATCCCAACATCGCCAGGTCCTCGGATACCGACCAGGGCACCAAGAAGGTCTCCGTGGGGGGCAACCCGGTGTGCGTGAAGGACTCCAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 64815-60024 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLA01000009.1 Myxococcus sp. CA010 NODE_9_length_112670_cov_50.9564_ID_6188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 64814 37 100.0 32 ..................................... CCAGGTGCGGCAGACGCTGGCCCCGTTCGATC 64745 37 100.0 35 ..................................... CTCATGCTCGACGACTCGCACGAAACGCGTAGTCA 64673 37 100.0 33 ..................................... GTGACCGGCAGCAACACCATTACCTTCCGGGTT 64603 37 100.0 33 ..................................... GATGCCTCTGGAGCAGCTGGTGGATCGCTCGAA 64533 37 100.0 32 ..................................... GCGGCCTGAGCGCCTCTTCTCCTGGGGGCTGT 64464 37 100.0 33 ..................................... GGCGTGAACCTGGAATGGGCGTACCGCGCCGAC 64394 37 100.0 32 ..................................... ACGGGCAAACTCCTCGATTCTGAGGACTTTTG 64325 37 100.0 33 ..................................... CTCGCTTGAGGACCCGGAGATTTGGCTGCCGAA 64255 37 100.0 32 ..................................... CCGCATCCACCCAGCGCCTTGTCACAGACGGA 64186 37 100.0 36 ..................................... TCTGACGGCTGGACGGACGAGCGCGTGGAGCTCGTG 64113 37 100.0 33 ..................................... CCATTCAACGCGCCCGACGCATGGTGGTGCGTC 64043 37 100.0 35 ..................................... CTCTGGTGAGTGGCGGCTGTCTGACGCGTCATCTG 63971 37 100.0 34 ..................................... TCTGCTTCGTCGCGTTGCCAGCGGAGCACTGGCC 63900 37 100.0 33 ..................................... AGTTGCCGTCGCTGTCTGGCTCGCCTGCGCAGG 63830 37 100.0 33 ..................................... AGCCCCGGCACCCGCGCGGCCTGGGCGGCGATG 63760 37 100.0 35 ..................................... CGGTGAACACCACCTCGCCGCTGGCTGCGACGATG 63688 37 100.0 36 ..................................... ATGACAAGGCGCTGGCGCCACGTGCTCCATGGCGAG 63615 37 100.0 32 ..................................... TCACTGCCGGGCCCGCCCTACTCCAGCGGCCC 63546 37 100.0 36 ..................................... AACCAGGCGCTCACGTGAGCGCCGCATCCAAGGAGA 63473 37 100.0 35 ..................................... GATGAACCTCTCGCCGGGCCGCTCCATAACGGCGA 63401 37 100.0 35 ..................................... TCTTCGCGCTTGGCCTGGTCGGTCTTGGGCAGCCA 63329 37 100.0 34 ..................................... CATCCGCGCAACGGACGTCTGGAACTCGTCGAAA 63258 37 100.0 32 ..................................... TCTCCACTGCTGACACTCACCACGAGCGCCCG 63189 37 100.0 35 ..................................... GCTTGCGGCCCCCGGGCTCCTTTTTCCACCCCCAC 63117 37 100.0 34 ..................................... GACTCGCCCACCTCACCCCGACACCCGCACAAGA 63046 37 100.0 34 ..................................... AGGCGCTCAAGCGGGGCGTGAAGAAGCACGGGAA 62975 37 100.0 33 ..................................... TACAGCGGGGTGTGCTCTTCGCACGGCGAGGCG 62905 37 100.0 34 ..................................... CGCCCGGCTCCCCAATCTGCGGTCGACCCTCGGT 62834 37 100.0 35 ..................................... ACGTCAGGCGAGAAGATGAGGTCCAGCGGCAGGTC 62762 37 100.0 34 ..................................... GTGGACACGGGCCCCGCGGTCAATCCCGATGCGC 62691 37 100.0 35 ..................................... GGTGATGGCGTCGGGGACGAGATTTGCAGCCTGGG 62619 37 100.0 33 ..................................... AGCCCGATGCCGCGCGACTACGCTGGGCCCGGT 62549 37 100.0 35 ..................................... CACTACGCCCCGCCCGGCAGTGCCTGACGCGCCTG 62477 37 100.0 34 ..................................... GCGCTCCAGGCTGACGGGTGGTGGCTCCGCTCGG 62406 37 100.0 33 ..................................... TCCAACCGCCGGAACAACGCGAAGTCGGACGCG 62336 37 100.0 35 ..................................... ACCGGCCTGGGCTGGCGGGATGCTTCCAGGACGCG 62264 37 100.0 34 ..................................... ATGCAGATGCACGGGGCCCGGTTTCGGCTTGCCC 62193 37 100.0 34 ..................................... GGCGTTACGCTCGACTATCGAGCGGACGTTGTCA 62122 37 100.0 34 ..................................... GGAGTCTGTCGGCCGCGCTGACGCGAGGCCGGCG 62051 37 100.0 34 ..................................... GGGCGCTGGGTGAAGGACTTGAAGGGCCGCTACT 61980 37 100.0 34 ..................................... GTCGACGCCGTCGAGGCGAAGAAGCCGGCCAAGC 61909 37 100.0 32 ..................................... GTGGACTGGCCGCATGGGGGCCGGCGTCCTGG 61840 37 100.0 36 ..................................... TCTAACCTTGTCATAAATCCGCATCATCCACGTGTC 61767 37 100.0 34 ..................................... CGAAGTCCGCGCGGATGGCGTCATGCGCCTTGGT 61696 37 100.0 36 ..................................... TTCGCCTGGCCCGTCGCCTCGGCGTACCGGCGGAGG 61623 37 100.0 34 ..................................... GGCATCCCCGCGCGCAGCCACGCCAGGACGTCGT 61552 37 100.0 34 ..................................... CTGTTGTGCCAGTCGTCCGCGTCGTCGGGGGTCA 61481 37 100.0 33 ..................................... CACCACCCCCTGCGCCGGGGCGGGCGGGGGCTG 61411 37 100.0 35 ..................................... ACGGACTTGAAGTCGTTGCCGTCCATGATCACGTG 61339 37 100.0 34 ..................................... AGCCAGAGTCCAGAGCTCGACCGGTGGGGCCGGC 61268 37 100.0 34 ..................................... AAGGAGTCCGAGGTCGCCACGGTGTTCGATGCCG 61197 37 97.3 35 ..................A.................. CGTTCGGAGGGGCAGGAGCAGAGCGCCACGGCGGC 61125 37 100.0 34 ..................................... TCCGCCAGCTCCAGCACGAGTTCCAACTTCGACT 61054 37 97.3 33 ..T.................................. TTGGGGTCCGCGTTCTCAACCTCCGCAGCCTTG 60984 37 100.0 34 ..................................... TTACGCGACATGCAACGCGGCGCGCTCGACCAGG 60913 37 100.0 35 ..................................... ACCGGCGTAGAGCTGGGGAAGCACGGGCAGGGCAC 60841 37 100.0 35 ..................................... ACCGGGCGCTTCCGCGAGGGCTTCGGCGAGCTCGG 60769 37 100.0 32 ..................................... CGAGCAGTGGCAGCGCCCGTGCATCGGCCCAT 60700 37 100.0 36 ..................................... AGCGTGGAGCGCAACTCCGGGGTGGACCCGAACAAG 60627 37 100.0 36 ..................................... CCGTGAGTAGTTGCTGGACTGCGAACTCAAGCTCAA 60554 37 97.3 36 .........................A........... TACTCCCGCTTGGTGGACAACCTCTCCGGCCCCGCG 60481 37 100.0 33 ..................................... TTCCCGACGTTGGCCACCGTGTTGATGCCGCTG 60411 37 97.3 33 ...................A................. ACGCAGAAGCGCGAGCCCGTCTACGACGCGCTG 60341 37 97.3 34 ...................A................. ATGTCGCTCGACATGAAGGAGTTGTCGGGCTTCA 60270 37 97.3 32 ...................A................. CCCGCGTACCCGCGTGATGCGGGCGGCGAGCG 60201 37 86.5 34 ...........C.TT.A..A................. GTCTCCGCGGAGCTCTCCGCGTCGCCCTGACGTC 60130 37 89.2 33 .........T..T......A................G CTTGCTTGGATGGAGCAGGTAGAACTGACTACC 60060 37 91.9 0 ........G.A.....T.................... | ========== ====== ====== ====== ===================================== ==================================== ================== 68 37 99.3 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGTGATGCGCTGATGCGTAGATTGACCGTGTTGATTTGTTACGACGTGCGGGTGTCGGACCCCCAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGATCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAAGACGATGCCCGAAAGACGGAGCATCATGGCGCCAGGGCACCCCTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCTATCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGCGGGGCAGGAACGGCGGGGCGCTTTCGTTGCCCCGCGGGCCGGTTCGCGAAATTCGGCCGGATTCCGTAGTCAGAACAGTATGTTGGAAGGGCAGG # Right flank : GCCCACGACGTCGTGGGTGGCATCAGCCGCGCCAGTCGCTCCTCGTGAACGCGAGGACTCTCTCTCTTCAACAGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCGTGCTCAGGCTCCAGAAGTCACCGGGCATGCCCAATACACGGCACTTCTGGCTTGAGGTCTTCGGGGATGCCCGTTTCAAGCGCAACGGCTCGTTCCTATCCGACGTGAACGCGGCCAACGCCCATCGGCTCACGACGTTGCTCATCGCCGTGAGCCGGCTGGACGAATTCAAGGAGGATCGCAGCGCCCCTCCTCCCTTCGCACATGGCCGGCAGGTGACGACGTTCGAATTCACCGTGGACGGCCGGCGCACGGGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCAGCAGGAGGCTGCCGCTTACGGCATCGAACTTTGAGCGCGAGGACCCCGGGCGCCCCAGGGCCGGAGGAACACCTCCGTCTCCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //