Array 1 877-1816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASHD010000029.1 Clostridium sp. K04 scaf_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================================================================================== ================== 877 30 100.0 36 .............................. TTAGCAGATGGTGGAATTGATGTAGTTGGTAGTTTA 943 30 100.0 37 .............................. CAGGAATACTTTACTTAATATTGAGAACAGTCCGAAC 1010 30 100.0 36 .............................. AATGATCCACAAGATACAGATCCAATTGACATAACA 1076 30 100.0 36 .............................. TTTAGATATTGGAGAAAGTGTAACAGTATCAAAAGG 1142 30 100.0 36 .............................. TACAAAAACATGAACAAAGAATATAAAGAACAATAC 1208 30 100.0 36 .............................. CTAGTTGAATCATATTTAACTTTGCAAATGTAGCTA 1274 30 100.0 36 .............................. GCAGCTTTTAATAAGAATCCATTTTTAAATAAATTC 1340 30 100.0 36 .............................. GTTTGAATAGCCATAAACCCACCTCCTAATCATTTA 1406 30 100.0 36 .............................. AGGATTTGCAAAACAGAATTATACCATGTTAGATAA 1472 30 100.0 36 .............................. GTAGAATTAATAGATTCTTTTATTGAGGATTATCCA 1538 30 100.0 164 .............................. ATTATAATTAGAATGGAAATAAAGAATAATAGAATGTTAATAGATTATTATTTATGAGTCAAAGAGTTAAAAAATAAGAAAATAAAAAATAGAAATTACATTTACATAATATACCTTATGTAGTAAAATATATATTATAAGAGATTTACTTATAATTTTTTTAA 1732 29 90.0 25 ...-.....T..T................. ATGCTGTAAATTATAGTATAAATAT G [1759] Deletion [1787] 1787 30 76.7 0 T.T.......TA.....G........TT.. | ========== ====== ====== ====== ============================== ==================================================================================================================================================================== ================== 13 30 97.4 46 ATAGTAGTAGCTCCATATTGGAATGTAAAT # Left flank : ATTCTAGTGAGGGGGCGAAATGAAAAAATTCTGTTGTATTTTATTATGGTAGGATTACCGATTATAGCTATAACTTGATAATAGTAATTGGATATAAAGTTGTTCTGATTGATAGAAAAAGAAGAATTATTTCTAAAGTATGAGGAAATAGATCTTAAGGTTTGATAAATCTTATTTCAAATAATAACTTTATTTGGTATGTTGTATGTTATAATTATATTAGGTAATAGTAGTTGATAACTTTAAATTTAAACATATTTATAATGTCTGAGATAAATATGTTTAAATTTAATTATTAAAGTAGAAAAAATAAATTAATTTAATTGTCGACCTAACATATGGTTAAAACATAGGGGGGAGACAATGTTATATAAATTCAATATTAGGGGTTGAATAAGTCTAAATATTTTATTTGAAAATATCTATAAAATTTACAAAATATAGAGATAGACAGAAATAAGGGATATATAATAAGAAAATCAGAGTTTAAGAGCGGACGC # Right flank : TATAATTCTATAATTAAAAAATAGTAGATAAAACAATGGGTGAGGTGATAATAAAAATAAAGTATGAATTAACAAAATAAAAGGAGGAATAAAATGAGATTTACTTTAACCTTAGAATTAGAGAAAAGTAGTTTTCCTATTGATTATAGAAGTATAGTCTTAAGTTTTATAAAAAATGCAATATCAAAATGCAATGATGGAAAATATTATGATAGATTTTTTAAGGATACTAATCAAAAGGATTATTGCTTTTCAGTAATACTACCTAAATCAAGATTTACTAAAGATGAAATAAAGTTGGAAAATAATAAGTTAAAAATACTTTTTTCAACAGGAGATGCAGAAAAAACAGGATTAATTTTATTTAATGCTTTTATTTTGCAAAAGAATAAAACGTTTTCACTACCGAACAAAAATTCAATGATATTAAAAAGTATAACAAATCAAAAGCAAGATTTAATAGTAAACTCAAGAGCTATATTTAAAACTACAATAGGTAG # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-1.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGTAGTAGCTCCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 10381-13454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASHD010000029.1 Clostridium sp. K04 scaf_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10381 30 100.0 38 .............................. TTAGAGTATGTAGCAACTGCATCAGCTTTTGTAGTTGG 10449 30 100.0 36 .............................. CTTGCTTTTAACTTTATATTTTGTTTTATAAAACTG 10515 30 100.0 37 .............................. AGAATTATCTCGCCGATTAGCTGTTTAGCTATAATTC 10582 30 100.0 37 .............................. ATGACTCTTGCAGAATTTCAGGAGTGGATATTAGCTA 10649 30 100.0 36 .............................. TATTAACACCTCACTATTTATTATTAATCTTGTGTA 10715 30 100.0 35 .............................. ACTGGCTATACTTCAAGTGGACTAGTTAGAGAAAC 10780 30 100.0 36 .............................. TTGATTCTAATTCATTTAATAAGTTGTTTCTTTTTT 10846 30 100.0 36 .............................. AAAACAATTACTATTGACAATAAAGAGTACGAAATT 10912 30 100.0 36 .............................. TCAGTAATATCTATTGATATAACAGATAATACTGAA 10978 30 100.0 36 .............................. CAAGAAGTTTATATTGACCAAATAATTTTTTAAAAT 11044 30 100.0 36 .............................. AGTAAACAAGCCACTTACAAGAGTTTTTAAAATTAA 11110 30 100.0 35 .............................. CAAAGTAATAAAAGTGTAGAACCAACAAAAGGAAT 11175 30 100.0 36 .............................. AAAATTAAAGCCATAAGGGGAACAAGTAACCATTTT 11241 30 100.0 35 .............................. AAGAAACTCTTAAATGATAGTTGTCCAACAACCAA 11306 30 100.0 39 .............................. TAATTCTGAATCAAATATTTCATCAACAGTTTGACCATC 11375 30 100.0 35 .............................. TGAGTTTCTATCAAATTGAGCCATTATTTCACCGT 11440 30 100.0 37 .............................. TATGACGATGTTTTTAAAGAAGTAAATAAAAATGAGA 11507 30 100.0 37 .............................. ATTCTAAAATAGAAAATGATGAATTAGTTGGGGAACT 11574 30 100.0 34 .............................. TCAAGCATTAAAACTCTTCCTTTTCTCTTATCCT 11638 30 100.0 35 .............................. TATTTTCTTTACTTAAATTGTAATAAGCACTTGCA 11703 30 100.0 37 .............................. GTAAGAAGTAAATACCCCTTATCAACATTAAAATTTA 11770 30 100.0 36 .............................. TTGCATTGTTGCTATCCCTCTTTGTTAATGTTTTAG 11836 30 100.0 37 .............................. TGCTGTTTATCGAGATTTAGTGCAATAAAAAAAGTGT 11903 30 100.0 36 .............................. TATGGTCAAGCAAATTATAAAGATATAGCATATTGT 11969 30 100.0 36 .............................. CTAGCTACTGACATAAGACCAAACTTAATAATACTT 12035 30 100.0 36 .............................. TAAAACTCCTGTAGTAGTTCAGTTTATCGGAATTGT 12101 30 100.0 36 .............................. TGTGAGTGTAGCTTTTAACGGCTATTCAATATTAAA 12167 30 100.0 35 .............................. ATGGTACTGTAAGGAAGTTAGAAAAGGGATTGAAG 12232 30 100.0 35 .............................. TTAGAGAAAGTGCTATAGAAGCATCTTCTGCAGAA 12297 30 100.0 35 .............................. GGAGACTATGAAAGATGTGTGGTCTACCTCAGTTA 12362 30 100.0 37 .............................. TTTCCTGCGGTTGAAAATTTAAAATCGTAATTTCTAT 12429 30 100.0 37 .............................. TGATTATTACATTCTTGTTGTAATCTTCTGATCCAAT 12496 30 100.0 35 .............................. TTCGTAGTAAATATTAAACTTTGTTCATCATCAAC 12561 30 100.0 37 .............................. GAGTATAGTGAAACTTTGAGTAAACTAGCTAGTTTAC 12628 30 100.0 36 .............................. CTAGTAATTACTTTAGTGTGTTCAAAATTTACATTC 12694 30 100.0 36 .............................. TTTTCTTTTGTTCCACTTTTTAAATAGCATGACCCA 12760 30 100.0 36 .............................. TCATTTTACCTGCGTTATCTGCTCCTGAGTAAAACT 12826 30 100.0 36 .............................. ATTTGAACAACATTGTTTTCTACCTTTACTACTGTA 12892 30 100.0 37 .............................. AGGGGAAATAGAAGGCTTCCAAGAATTTAAAAGACAA 12959 30 100.0 36 .............................. ACTTTCAAAACAATGACGGTGTGTTTACTATTGAAC 13025 30 100.0 37 .............................. GAAGTTAAAGAAATGTTTATATCTGCTCTAAAAGCTG 13092 30 93.3 36 ................G.........G... TTTTTCTACAAATTACTTTTATTTTCTTTGTTTTTC 13158 30 100.0 37 .............................. ATTATAAAAGTTTTTGGTACTGGAACTATAGAGTTAA 13225 30 100.0 36 .............................. AAAGCAGATGAAAACTCTACAAATTCAGCTTCACAC 13291 30 100.0 37 .............................. GTAGGTAAAAATGGAATAACAATAGAAGATGTAAATC 13358 30 100.0 37 .............................. AAATACTACGGGACAGGCTTTGATGTTATAGACTTCT 13425 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ======================================= ================== 47 30 99.8 36 ATTTAAGTAGTACCATATTGGAATGTAAAT # Left flank : AATATGATCCATTTAAAATTTGGTGGTAAGGGGATTGAATAAATGTATGTTATACTAGTTTATGATATAAAAACAGATGATGGTGGTCAAAGGGTGTTAAATAGAACATTTAAAATATGTAAAAAATATTTATGTCATATACAAAACTCTGTTTTTGAAGGTGAGTTATCAGAAGCACAAATTGTCAAACTTAATTATGAATTAAAAAAGGTTGTAAGGGATGATAGAGATTCTATAATTCTATTTAAGAGTAGGAGCGATAGATGGTTGAGCAAGGAGATGTGGGGTAAAGATGATGATAAGACTAGTAATTTTATTTGATTGTCGACCACAGATAGTGTTAAAATATAGGGGGATAGACAAGAGTAGATAAATACTAGGTTGTAAGATGAATATTGCTAATAGTTTGAGATTTTAAATATTGTTGATATGAAAATTTATTATAGGTAGACAAAAAGTAATGATATTGAATAGAAAAATCAGCTTATAAGAGTTGTCGG # Right flank : AGAGAGATATGAAAAGAATATAAAAGAAATATTTGTAAATCTAAAAGTTTAAGAAATTTAATAAGATTGATGACTTTTAAAAGTTAATAATATTTCATTATTTGTATAGAGTAAATACAGCGGATAAAGTACATTTAATGAATATAACATCAAAATATATATTTAAAAATACTAAACTAATAAAAGTACTAAAGAAAATTTGAAAATTACCATAAGGTATATTATACTAAAAACTGAAAAACTTAATATGGACAGTTCATTAAGACCATCCTGTCCTTAAACAAAACTAGGCTAAGAAATATTAAATAGATTAAAAAGTTAAGGTTTATTTTATTATGCTAGTTTGTGTAATAAAATAAACCTTTTTTATTTAATAAAATAAGGCCTAAAAATATTAAATAGGAGTGATAAGTATGAATAAGAAAGCAGTAGTTGTATTTAGTGGAGGCCAAGATTCTACAACATGTTTATTTTGGGCCCTTAAAGAATTTGATGAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAGTAGTACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //