Array 1 1847582-1849259 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLM01000008.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03218 2014LSAL03218_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1847582 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1847643 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1847704 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1847765 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1847826 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1847887 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1847948 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1848009 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1848070 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1848131 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1848192 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1848253 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1848314 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1848376 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1848437 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1848498 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1848559 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1848620 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1848682 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1848743 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1848804 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1848866 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1848927 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1848988 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1849049 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1849110 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1849171 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1849232 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1865518-1867499 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLM01000008.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03218 2014LSAL03218_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1865518 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1865579 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1865640 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1865701 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1865762 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1865823 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1865884 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1865945 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1866006 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1866067 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1866128 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1866189 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1866250 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1866311 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1866372 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1866433 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1866494 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1866555 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1866616 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1866677 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1866738 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1866799 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1866860 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1866921 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1866982 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1867043 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1867104 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1867165 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1867226 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1867287 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1867348 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1867409 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1867470 29 96.6 0 A............................ | A [1867496] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //