Array 1 1364912-1370745 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATO01000009.1 Porphyromonas cangingivalis strain NCTC12857, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1364912 33 100.0 34 ................................. ATCCTCGAAGCTGTCCTTACCATTATCCACATGG 1364979 33 100.0 33 ................................. ATTTTACCGAGGATATAAGAACCCTTAATCTAT 1365045 33 100.0 34 ................................. ATGTCATCTGCGAAGACGATACGTGAGGCTTTAA 1365112 33 100.0 34 ................................. TTGCCCCTGTGCTCCGATGTCAAGTACAAGTTTG 1365179 33 100.0 35 ................................. CGGCCTATGCCTTTTGTTGCCCCATGTGCTTATCT 1365247 33 100.0 35 ................................. GCACGATACGACAGGCGACTATGGACGGTCATAAC 1365315 33 100.0 35 ................................. GAGTTCGGGCGGGGAAGGGGCGTATATAGACTCGA 1365383 33 100.0 34 ................................. CAGCTCGCATGGGCATCTATCTGCCAACGTGCAA 1365450 33 100.0 35 ................................. TGCCAAATCTTGTGGGCTTATCTCTGAGCGGTAAA 1365518 33 100.0 34 ................................. ACCCTTTTGCGCACGCGTACGCTGGGGTATACCT 1365585 33 100.0 35 ................................. CAAAAAGCCTACACCGCAACACCTTGCACTGGAAA 1365653 33 100.0 34 ................................. AGCGAGTACTGCATCCGAGATGTGGAGGTCGAGA 1365720 33 100.0 34 ................................. TCGGTGCGCCTGCCGTAGGCCACACGGTAGCGAT 1365787 33 100.0 34 ................................. CACCTCGTGTCCGCACGCGCCTTGTCTGGTTAGG 1365854 33 100.0 35 ................................. TGGTACTACTTTTTTTTGGGGGTCTTTGTTCTTTT 1365922 33 100.0 34 ................................. TGTCGTATTTTTTTGCCATAACTGTGTTTTTATT 1365989 33 100.0 35 ................................. TGTCCGATGGTATGCGCTCCGATCTGATCGAGGGG 1366057 33 100.0 34 ................................. GTACGTCTTACCGATATTGTATCGGTCGTCTAAT 1366124 33 100.0 35 ................................. GCCTTGACATCGGTCTTGACCCACTTTGCGCCATC 1366192 33 100.0 35 ................................. TTTGTGCCCTCCCATCTGTCTACGTAATAGGCGAT 1366260 33 100.0 35 ................................. CCTCGATGCAGTCAAGGAGGAGAGAAATACACCCC 1366328 33 100.0 33 ................................. ATCTATTGCACGATTAAATACAGTGCGTATGTT 1366394 33 100.0 37 ................................. ATATCCGCTCCCATATACACTTACGACCAGAATACAA 1366464 33 100.0 33 ................................. CTTTATGTCAAGCATTTCCTTAGGTGTTCTCCA 1366530 33 100.0 35 ................................. AGCTACGTAAGGTGGCGAAGGAGTCCGGAAATGAG 1366598 33 100.0 35 ................................. CCGGATGATTATCTATCCATTCCATATCAAACATT 1366666 33 100.0 35 ................................. AAGTCGTCTCGTTCGAGCGACTACAAGGCTTCCAG 1366734 33 100.0 35 ................................. TTGGACTTTGCAAGTTGCTGATGTGATATACAATG 1366802 33 100.0 34 ................................. AGCTATCTCCCGAGCAGATCAAGGAGATTGCCGA 1366869 33 100.0 34 ................................. ATCCAACTCATCCCAGTTGCCGGCGAACTTATCC 1366936 33 100.0 33 ................................. TTCGAGGTCGACCGATGCAGCTCCTCGGAGATC 1367002 33 100.0 35 ................................. TTGACAAGTCTGGAGGAATCAGCGTTAACAGTTAT 1367070 33 100.0 33 ................................. AGGTCGCTCGTAATGTCAAGTATTAAATTATAA 1367136 33 100.0 35 ................................. ATGTTTTTTTTACAAAATGTTGTTTGTGTAAATTC 1367204 33 100.0 35 ................................. ATCCTCGTGTCGCCTGTGTTTTTTGTTCTTTTCGA 1367272 33 100.0 34 ................................. CACCCTTTCCAACGGAGCAACATCCTCCGCAACT 1367339 33 100.0 35 ................................. GCATCCCCGAGATATGTAGGTTTTTCGGGGTCTCT 1367407 33 100.0 36 ................................. AACAAATACCAAAGCCAGCACGCAGAGCTCACGGCT 1367476 33 100.0 33 ................................. ATCTCGAAACAAGAGGATCGCTACCGTGTGGCC 1367542 33 100.0 34 ................................. GAGGAACTGACCGAAGAGCAACGGCAATCACTCA 1367609 33 100.0 35 ................................. TATGCCCACGAGAACGGTAAGACGATCCGCATAAA 1367677 33 100.0 33 ................................. ACTCCACATCGAGGACAAATCGATGTCCTCACA 1367743 33 100.0 35 ................................. CTAAAAGACAAGATGGCGATACCTCAAGAGTCGGG 1367811 33 100.0 34 ................................. TCGTATAGCTCTGAGCATCTCATCCCAGAGGTAA 1367878 33 100.0 34 ................................. AAGAAATGAACGCAATTTTGCAAAATGAGAAGTT 1367945 33 100.0 36 ................................. GCCTTTTGAACCTGCGTCCATCTATCGCCCACGGAG 1368014 33 100.0 34 ................................. ATCTATCGCCCACGGAGGCGAAAACAGCACGCAG 1368081 33 100.0 35 ................................. TGCTATTGGCTGATGCCGATGCGTGCTAACTTTCG 1368149 33 100.0 36 ................................. ACGTGGAGATCTTGAACGAACGTACAGCTCTCTTTT 1368218 33 100.0 35 ................................. ACCTTAACTTGTGAAATCCCCCTTTTGAATGAATA 1368286 33 100.0 34 ................................. TTCCCTGCCTATCCATCGGATTATGCCGTTCAGC 1368353 33 100.0 34 ................................. TCACAAGGGATGGACGAGAGTTGAAGAAGAGGGA 1368420 33 100.0 34 ................................. CTCATTGCTTGGGTTACCTCGTCTTTGGTGAGGT 1368487 33 100.0 33 ................................. CGCACCGTCTCTGTACAGTAAGGCTCTCGATAT 1368553 33 100.0 35 ................................. ACGAAGATCCACAGCTGCCAGATCAGGATGATAAT 1368621 33 100.0 35 ................................. ATGACCTCAACTCGTTTGTCGGCGAGGCGGCGACC 1368689 33 100.0 36 ................................. CGTGTCAAAGAAGTATACTCTGATCACTGCATCGTT 1368758 33 100.0 34 ................................. CTTATCGTTTATTGTCAAAAGATTTTGTCGATAT 1368825 33 100.0 35 ................................. CACAAGGAGAAAAAGAGATTGACAAGTTGAATAGA 1368893 33 100.0 32 ................................. AGAGTACTTGCACGAGAGTAATGGTGTGATTA 1368958 33 100.0 36 ................................. GACATTATTTAACCGCAAAATAATATCGGTTACGCA 1369027 33 100.0 35 ................................. ATTTGGGCGAACTCGGGTAATGGAAAGACATCTTT 1369095 33 100.0 33 ................................. GCTGAGCACCGACCTTACGAACTTGTACTCGAT 1369161 33 100.0 33 ................................. GCTGAGCACCGACCTTACGAACTTGTACTCGAT 1369227 33 100.0 36 ................................. AGGAAGCTGCCGACCGATACAAGCAGGGCTTACGCA 1369296 33 100.0 35 ................................. GTCCTCCCGATTGATGTTGAGCGGGGTAGGATACC 1369364 33 100.0 35 ................................. GCCCCCCAGCTTATAGAGACGACCCCCGACCTCTT 1369432 33 100.0 33 ................................. TTCGACACCTCAAGACAAGCATCAGCATATAGC 1369498 33 100.0 33 ................................. TTCGACACCTCAAGACAAGCATCAGCATATAGC 1369564 33 100.0 35 ................................. TAAAGCCCGAGAGAGCAACAGACCGAATGGGTGCA 1369632 33 100.0 33 ................................. TTCGACACCTCAAGACAAGCATCAGCATATAGC 1369698 33 100.0 35 ................................. TAAAGCCCGAGAGAGCAACAGACCGAATGGGTGCA 1369766 33 100.0 34 ................................. ATGTCATGGGGAGAGCTTGATGAGAAAGGCAAGC 1369833 33 100.0 35 ................................. ACGGGCACGATCCTTCAGCTTTCACCTGAGCAGAT 1369901 33 100.0 36 ................................. GACACAGAAGGAATGGTGTACGTAGATAATGAACGT 1369970 33 100.0 36 ................................. GTTGATAGGCAACGATCTAAAGACATGCAAGTGTAT 1370039 33 100.0 35 ................................. TTTGAAATGGTAGCAACCGACCTGCTACTTGCGGA 1370107 33 100.0 34 ................................. ACTTAAACCTTGGCACTTTGGTCGCGATATTACC 1370174 33 100.0 34 ................................. CTCGATGAGCTGCAAAGCTCCATCGACCTGCTCT 1370241 33 100.0 34 ................................. AAAAGTCCCGTTTGACTGATTAAGCCTAATCATA 1370308 33 100.0 35 ................................. AAGCTCATAGCATCAGCCGTTGATGACTTTTGGCA 1370376 33 100.0 35 ................................. GATATCCCCGAGATGGAGCGTGCGTTGTATGTGCT 1370444 33 97.0 33 ................A................ ATCTCGGTAGTCCGCAAGATACCCCATGGCCTT 1370510 33 100.0 34 ................................. CCCCTACCATCAATACCCCTGCACATGCAAGAAA 1370577 33 100.0 35 ................................. ATCTCCCCAACTAACGACCATCTTGTCACTCTCGT 1370645 33 100.0 35 ................................. TCTGCCTTGAATCTCTCATGTGCTGTCTCATCCGA 1370713 33 97.0 0 .........................G....... | ========== ====== ====== ====== ================================= ===================================== ================== 87 33 99.9 34 GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Left flank : GGTCTTCGAGTGCCTCGTAGATCCGGCGCAGTTCGCTGTTCTCAAACACCAACTCCTCGACACCATCAATGATGAAGAGGACAGCCTCCGCATCTATCAACTTGGAAAGAACTACCGCTCACATATAGAGATCTACGGCCGTGCCACATCCTTCGAGATAGAGGGCGAACTCATCATATAGCCTCGTACGTCTCCTACGCTCCCCTTAAGACAAACCTCCAACGGTAGTAAATACATAACAACAAGAGGAATCCCTCGGCATACAGACATATCTTCAGTCTCAACAATCAGATCACCCCACACAAACAAACCAACAACAAAAAAGTCCTCATCTGCGAACCAATAGTGCACAGCAAAAAGCAGGCAAATTCGCACCCACAGATAATCAAGGTCTTAAATTGCTTGAGCATTGTATTTAATCCACTATCGACTTCAACGAAAAGCCTCTCGCAAATCAAGCCTTCAGAACCGATATAAAATCTATATCTTTGTGGCATACT # Right flank : CAAAGTTTTATCGAAAAGGGGTAAGTTGATACTATGTCGCGGTTCGAATGGACTGCGACATAGTATTGTTTTATCTAAAATGCTGAGGCTCGGAGTTGAGAGATCGGGCCATAATCTTGTATGACATTCGACCGAATACAATAAGATGGCTCAAAGGATATCTTGAAAGAGTCCGAATACACAATGAATGACTTTCAGGGGAGTGCGAAGACAAAAGTCTTGGCACTCCCCTGAAGCTGTTTAGAGAGATGGTTGTCAAGAGAAGAACCGTCAGCTAATTTGCCCCTCCAGCATCTTGAGATAAGTAGGCGATGAAGAGCGGAGCTGATCGTCTGTTCCGACAGCTTCGATATGGCCGTTATTGAGGAGTATGATCTTGTCCGCACTGCGGATTGTCCTCATACGATGAGCAATGACGATGACGGTCTTGTTGCGGATCAGTTCCGAGAGAGCATCCTGGATGAGGGTTTCGTTCTCCACATCGAGGGATGCCGTAGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1806740-1807660 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATO01000009.1 Porphyromonas cangingivalis strain NCTC12857, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1806740 37 100.0 34 ..................................... ACTATGAGTAGGCTCGTTGAAATTGGTGATTTAA 1806811 37 100.0 36 ..................................... TTATATTGGTTAGTTCTATCATTATTCTATCTCTAT 1806884 37 100.0 37 ..................................... GTCTGATATACTATAAACAATATCTCCCTTTGTATTA 1806958 37 100.0 37 ..................................... ATATGTATGGACTATTCTAATAATTACACTATCATTA 1807032 37 100.0 38 ..................................... TTATTTATTGGTTAGTTTTAATAGTGTTCCGTACCAGT 1807107 37 100.0 37 ..................................... TTTAATTTCATAGCCAATTATATCGAGACAGCGAACA 1807181 37 100.0 36 ..................................... ATTGAGTCGTTCAAGTCAGAAATTTTGGACTCATGG 1807254 37 100.0 34 ..................................... GGTGGTCGATTGAAGGACGGCATCTGTATATTCT 1807325 37 100.0 36 ..................................... CCCTCGGACTCTTTGTCCTTGCTGCGCCATATTTTT 1807398 37 100.0 37 ..................................... TTAGAAAAATTTTTATTTATAATTCCGTTTATTTTCG 1807472 37 97.3 37 .C................................... TTATCACCACTCATCTTTTTGGTCTTCGCAATCTGCA 1807546 37 100.0 41 ..................................... TGGGGGAGCTTTGTAGTACTCTTCATCGGATAGCTTCTGCA 1807624 37 78.4 0 .....C......G...G...........GGC..C.G. | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 98.1 37 CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Left flank : GCCGATGAAGCCATCTTAGGCACAGGGTATCCCTCTCTTGTGTCTGTACCCTCCTAAGCGGCCCGACATTCATCACCTTTGTTTGCTCTTGGAGTGGATTTCATTTTCGAAAAATTTTTGACTCTGTTGAAATTCACTTTTTGCTGTCTGTCAGAATGTTATCGAAAATATGGTTTTGTGTCTATTTTCGAAAATCGCAGCAGTCGAACTAAGAGAGAGTCGTTTTTCGAAGAAATGCGATTTTGTCGATTTGTAACCGCCTGATAATCAATAGTACATAATGAGCGTTTTTCGAAAATCGAAATAATTGATTTTTTGTTTGGTTTTTCGAAAAATCAAAATCTTTATATATCTTTGTCGTACAGCAATTTGAGGGCTACTTTTGACCTCAAAGTGTTCATACAGATACATTCAAAGAGGACGATTTTCGAAGAAATGACCACTGCTGATTATCAACTCTTTACAAAATAGGTGTTCAGTAAGTTTCTGAAAATCAATCT # Right flank : CATAGCGATGAAGCTCGATTGATCAATATATACTTGAATAGATAGGGAGAGTCACTGAAAAAGTCGTTAAAGGCGATTCATCGTCTTTAACGACTTTCGTTATCAAGTCTAACGACTTTTTTTGTCGCTTCCTATGATCTTTTTATACACCTCTTTCAAATCTCTTCAGAGAATTTTGATCGGCAGTAAACTTTCTTACAGAGTTGTTGTCTAAAAACGTGCACTTCTATAAAATTTTATTATTTTTGCCGTGGTCTGAACCATGATTAGTTAAGATCCTTTTCTTCAATTTAAATATTTTATGATTTTTGCTTTTTAAAATCAGCTCTTCGATATTGAAAGATCTAGAACTAGAGATATGATGTAATCCAAGTGTATGAAAATTGGCTACAAACATAAAGGATTGGGCACCATACAGGATGTTCGGAGTCATTTGTTCCGAACATCAAAACGATATCAGAATCGTAGTGATAACTTCGGGTGTGGTTCGCTTATATCTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 1818570-1819260 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATO01000009.1 Porphyromonas cangingivalis strain NCTC12857, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1818570 37 100.0 35 ..................................... AACATAAGGGGCATCCCATTCTCCGATAAGCTTGT 1818642 37 100.0 35 ..................................... AACTCTTGAAAATTATCTTCGCAAGACCATTTATC 1818714 37 100.0 34 ..................................... CCCATAGTCTCCCCTATGATCGTTGCTGTTTTTA 1818785 37 100.0 36 ..................................... AGTTCGTGGCAAAATTTGTGGAAACAGGCAAACAAA 1818858 37 100.0 35 ..................................... GTTGTGATGCCGTCCTTGTTTGGGTTGCCGACCGC 1818930 37 97.3 36 ..........................G.......... TTTAGGACTTCTTGTGTCATAGTTAAGGGCTGATAA 1819003 37 100.0 37 ..................................... TCTTCACGTTTTACTTGATGCATTACTTCACAGTTAA 1819077 37 100.0 38 ..................................... TCAAGGGCGGCTTTATCCTCCTCGAGCAGGTTGATTAA 1819152 37 94.6 34 ...................................TA CCCTAAGTTCAAGCTGAAATACAGCCAACTTAGA 1819223 37 75.7 0 GT.T.......AAGA......G..G............ | A [1819252] ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 96.8 36 TCAACTATACATGTTCAGTCATTAAGACTATTAAGAC # Left flank : ACGCACAAAGATCGTATGCTCCTTCTCTTCACGGAAGTCCTCCAATGGGACTTCATGACATTGAGAATGTCGTCGGAGATGCCTCCAAAATACCTCGTTTATTTTCGAAAGTTTTTTGAGCCCTGTAAAAATATCTACCTGTTGGTAATCAGATGTTTGCTGAAATTAGTATGTTTGTTGAGTTTTCGAAAATGGCAGAAAGTCTGTGGTGTAGATGCTTATTTTCGAAGAAATGCCATTTTTTAGGTTTGTAATTATCTGATTTTCAAATGTGTTAAATGCTGATTTTTCGAAAATCGAAATTTGTATCTTTTCTTGATGATATTTTCGAAAAATCAAATACTTTGTATATATTTGTTGCACAATAGATTGGCGAATCATATTGACTTCAAATTGCTCACGTAAGAACATTCATAACCAGTGATTTTCGAAGAAATTAACGCTGTTGATTATCAGTTGCTTATGATCTTGCATTTTAGTAAACATCTGATAGTCAATAA # Right flank : CGCAGGTTGAGCAGAGAGAGAAATCTCTTTGCGAAATCGCTTATACCCATCGTTTTATTATTATTTTGTTTTATATTTGCGGTGTGGAGGAGCGAAACCTCTCCGGTGAGGTGTCGCAAGGCATCGCACCCCCTATCGGAGGAGATGAGTTATCATCTCCTCTTGTCATTTATGCCACTCTTACTTGTAGGTGTCATACCGTAGCAAAGGCTTTTTGTCTCTTATGATTGTTACGACTATCTATCCATATCCATCGTGAAGGCAGTCAAGTCCTCGTATGTACTTTCAGACGGTATCGAGAAGCCGAAAAAAGTCGTTAAAGACGATTGATCGTCTTTAACGACTTTCGTCATCAAGTCTAACGACTTTTTTTGTCGCTTCCTATGATCTTTTGTATTGGGGGGCGGAGGTGGAGGAGATGGGGGCGGAGGCTTGATTTTCGCAAGTCGGGTAGAAGTCGTATTTTTGTACCTATATTTATATTAGGTAATGACAGACAA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAACTATACATGTTCAGTCATTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //