Array 1 1696290-1698597 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134373.1 Yersinia pseudotuberculosis strain NCTC10275 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1696290 28 100.0 32 ............................ AGCGACAACGAAGGGCATGATGATGGCTTTGA 1696350 28 100.0 32 ............................ AGCTCAGCAATGCTGAAAGGCCCGATTGATAT 1696410 28 100.0 32 ............................ ATAATCGTATCATCATTTTCAATTAATTTGTC 1696470 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 1696530 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 1696590 28 100.0 32 ............................ CATTCAAAAGCGAGCAACAGGCCAATGCAATA 1696650 28 100.0 32 ............................ ATCGGCTGGGATGTTACTCAGGAAGCGCAGAT 1696710 28 100.0 32 ............................ TCCCGTCTATCGCCGCGCTTAACCGCCACCAG 1696770 28 100.0 32 ............................ ATAGGCATAAACTTCATCATCGAACTGTAAAA 1696830 28 100.0 32 ............................ ATCACACATAATAAAATCATTTTTAACGTACA 1696890 28 100.0 32 ............................ GCACCTACGCGGTCTGGTAAAGGTGTTAGTGT 1696950 28 100.0 32 ............................ TGTTGAAATACATGTTCAAGGAAATGGTTTAG 1697010 28 100.0 32 ............................ TGTTGAAATACATGTTCAAGGAAATGGTTTAG 1697070 28 100.0 32 ............................ CGCCAGGCAGAATGCTCTCCGGTTCCTCACTA 1697130 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 1697190 28 100.0 32 ............................ TATAAGTTGTGTCTTTTAAACGCTTTGAACGC 1697250 28 100.0 32 ............................ TGTTGAAATACATGTTCAAGGAAATGGTTTAG 1697310 28 100.0 32 ............................ CGCCAGGCAGAATGCTCTCCGGTTCCTCACTA 1697370 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 1697430 28 100.0 32 ............................ CGTTAGTTACCGCACGACCGGCGGTCGCAGTG 1697490 28 100.0 32 ............................ TAACTTGAACTCTTCGAAATACATTCGACCTT 1697550 28 100.0 32 ............................ ACCTGCAAATTCTTTAGCTTCAATAACATCTA 1697610 28 100.0 32 ............................ AATATATTTACGGTGGAGGTGTTGCTGAAAAT 1697670 28 100.0 32 ............................ TACCAAAGCCGGAGAATGTGGCTGTGCCACAA 1697730 28 100.0 32 ............................ TCATATCCCTCAGAATCAAAAGGTAGAAATGA 1697790 28 100.0 32 ............................ GCTGGAACCCACTGACTTACATTGATCGTAAC 1697850 28 100.0 32 ............................ ACTCAGCCACACCAACATACTTAAGCCCAAAA 1697910 28 100.0 32 ............................ ATGCCGCAACGCCACACTCAAGCTGCTCGCGC 1697970 28 100.0 32 ............................ TTGAGCGGCTCAACGCCAGCATCAAGCAAGTT 1698030 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 1698090 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 1698150 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 1698210 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 1698270 28 100.0 32 ............................ AACATCACATGCCGCAAAATATTCATGCGCTG 1698330 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 1698390 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 1698450 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 1698510 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 1698570 27 85.7 0 ...................-A.A.C... | T [1698594] ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2654482-2653734 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134373.1 Yersinia pseudotuberculosis strain NCTC10275 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2654481 28 100.0 32 ............................ AGAATGATGAGCAGTAACGCCGGTAGATAGGT 2654421 28 100.0 32 ............................ AAGTTCGGGAAGAATGGTGACTTCTTCCAACT 2654361 28 100.0 32 ............................ CATCGTCAACGCGATCGACGGTCGCACGAAAA 2654301 28 100.0 32 ............................ AGATAGAGCTAGTGGAACAAGGAGGGTGGTTA 2654241 28 100.0 32 ............................ TAAAAACACCGTTGTAAATAATACTTTTAGTG 2654181 28 100.0 32 ............................ ACCCCAAGTACCACCAATAGACTCCCAATATT 2654121 28 100.0 32 ............................ TGTCTCAAGAGACGAGGAAGTAAATATGCGTA 2654061 28 100.0 32 ............................ GTTAAAGATGCGCTAACGGCTATGATTCAAGT 2654001 28 100.0 32 ............................ TGAGCGCGCCCCACTGCGCGGCGTTGAGCGTA 2653941 28 100.0 32 ............................ ATAGCGTAATACCATCGTCGGGTTAATATGCT 2653881 28 100.0 32 ............................ TTGCTCCATCAATTTGCGAGCCACCTGTGATC 2653821 28 100.0 32 ............................ GTCAACGCTTCACTCCTTGCGCGGGGTATAAC 2653761 27 89.3 0 .....................CC.-... | T [2653736] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //