Array 1 3501-3895 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYJW01000113.1 Saccharopolyspora rectivirgula DSM 43747 Contig113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3501 29 96.6 32 ............................T CCCCACCACCAGATGCAACGGAGGAGCTAGTC 3562 29 100.0 32 ............................. CAGATCTGGCGAGGTGACGCGGCCGGCCGCGG 3623 29 96.6 33 ............................A CTGAACATGACCGCCCGCCGCTGCTGGCGCAGC 3685 29 96.6 32 ............................A TCACCTGGATAGGAGGTGTTTCCGGTGCACCC 3746 29 100.0 32 ............................. ACCTGATGGGGAGGGTTTCCCGTGTCACCCAT 3807 29 96.6 31 ............................G GACAAGCGCTTCGTCGCTCGCCGCGACAACC 3867 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.1 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : AACCCTCGAGCTGACTGCCGCGGGCTATGGCCGCCATGCGGCCAGTTCGTTCGGTGCCAGGGGAGTTGGATCTGCGGCGTCGCACTCGCTGGAGGACTGCGGGAGAGCACTAACCAATGGTGGTTGGCTCCCGCATCGTCGCTTTCGACTGCGAGTTCACCGAACCTGCTCGATGCAGCGGTCGGTGCCCGAGCGTTTGAGCTTGTGAAAAACACGATTTCAAGCGGCTGTCCGGGCCAACGCACCTGTGCGGGTAGATCTTGAGCCACCCGTTCGACAGAGGTGCAGGTTGGCGCTGCTCCGTTGCGTGCTGAATTTTCTGCTCGCCGAGGTGCTCCCCTGCGTGCCGGGAGTCGTTCACCTTCGAATCCACCGGCGGCAGGTGCAAGTACTCTTCCCACACGTGGGACAGGAGTGCGCTCCGGAGGCTACCTTCCTGGCGGCGGAACAAAGTGAATCTATTTTGCGGTGTGGGCTGCTATAGTCCCTGGTCATCAAGT # Right flank : GGTCTTCGGCGAACGGGGCTGGGCGGGCTTCAGCGTGGAAGCGGTGGCCAAGCGCGCCGGCGTCGGGAAGGCGTCGATCCACCTGCGCTGACGTCCCGGTGATCAAAAAGCACAGCAGCGAGGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 274-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYJW01000170.1 Saccharopolyspora rectivirgula DSM 43747 Contig170, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 273 28 100.0 33 ............................ TCGCCGCAGCAGGCGTCCGTCGTCGATGATCGC 212 28 100.0 33 ............................ CGATCGGCTGCAGCCAATCGGGCCGCTCATCAA 151 28 100.0 33 ............................ CCAGTGAGCACCCAGCACGACACCCAGTACGAC 90 28 100.0 33 ............................ GGAAGCCGCGGTCCCCGTTGATATAGGTCCACA 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTGCTCCCCGCGTATGCGGGGGTGATCC # Left flank : | # Right flank : CT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 1-581 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYJW01000022.1 Saccharopolyspora rectivirgula DSM 43747 Contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 1 28 100.0 33 ............................ GGAAGCCGCGGTCCCCGTTGATATAGGTCCACA 62 28 100.0 33 ............................ TTTGGTGAGCGAGGGGGCCTCTTGCCCCTTAAC 123 28 100.0 33 ............................ GGCGATCAACGACACCCACGGGCACCGCTTCGG 184 28 100.0 33 ............................ TGCAGGCGACAAGGCGCAGCAAGGGCGACCCCA 245 28 100.0 33 ............................ ACCAGCGCAGCAGCCGCCCGTCGTCGATGACCG 306 28 100.0 33 ............................ GACTTCTGACCGGCTCCGCTGGGCGTAAAGGTG 367 28 100.0 33 ............................ AAGGTATGCCTCTGCTGCAGATCCAACCAAGAT 428 28 100.0 33 ............................ CAGCACCGCCACCCACGCTGCCCAGTTCGCACC 489 28 82.1 36 .............G........G.G.GA GCCGTCGGTGGTCAGCCACCGACGGCTGGACTCGCC A [509] 554 28 75.0 0 .........A..GTC.......AT...T | ========== ====== ====== ====== ============================ ==================================== ================== 10 28 95.7 33 GTGCTCCCCGCGTATGCGGGGGTGATCC # Left flank : | # Right flank : TCCCTTCACGAGCAGATTGAGACCCCCTAATTGGCGAGGTTTTTGTCCTTTTAGTCCTAATAGCCTTGAATGCGGGTGTCTGTTCAGGGGTCGGGGTAGGTCTGTCTTGCTGCTCCGAGGCCCAATGTGCGAGAAGCGCTTGATCAACTCTTCAGGGTCGATTACCTTTCGTGATCGCGCGATTGCTGAATCTGCTAGTTGTCCATGGGGGTTCGGTTTCATCTGGGGTGCCTGGGGGATCGGGGAGAGCTCTTTGTCGGTGCTCTGTGCTCAACTCCGAACAGGAATGCCACCGCGGTGGGGCAGATGGTTCGCGAGCACGATGAGGTAAGGAAGAAGATTGGAGTTGAGCGAAGCGGCCCGTTCGGTGTGGGCGAAGTCGACCGCTCGGGACGGGAGTTGGTTGCCGCTGTGGCAGCACATGGACGACTCCGCGGACATCGCAGGGCTGTTGTTCGACCAGTGGCTAGCTCCCCGGATCGTCCAGCTGTTCGCCGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 10192-10708 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYJW01000022.1 Saccharopolyspora rectivirgula DSM 43747 Contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10192 29 96.6 32 ............................C CGATTGCTGTGTCGGTACCTGACGGAGATGTA 10253 29 100.0 31 ............................. TTCGTTCCACGGGCGTGCGTCTCCCAAGTGT 10313 29 100.0 32 ............................. TGGTGTCGGTTCGGAGAGCGCCTGCCGGTGCT 10374 29 100.0 32 ............................. GCTGTCGAGCCCATTGCCTCCGCCCGCACCGA 10435 29 96.6 32 ............................A GAGCTGGGGTGTGACGGCTACGTCCGGGCCAT 10496 29 96.6 32 ............................C CACATTCGCCCGGCCCGCCCCGTACAGGAGGC 10557 29 93.1 32 ............T.T.............. GTTTTCAGCCACGGCACGTGGTTGCGGTACTG 10618 29 93.1 32 ............T.T.............. TTGTGCGACAAGGGAAGAAGGCGGCTGTTGCC 10679 29 82.8 0 .......T..T.............GG..A | A [10696] ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : ACACTTGACCCGGTGGCTGCTGGAAATCAGCCCCGGGGTTTTCGTCGGGCACATCTCCGCTCGGGTGCGGGAGGAGATGTGGCGACGCGTCGTCGAATTCGTGGGTGACGGGCGAGCGATCATGGTGCACTCGAAGCACGGTGAGCAGCGGCTTGCCTTCCAGGTCCACGGGCACGACTGGACCCCGGTCGATCACGACGGTGTCGTGCTCATGCGCCGCCCGGCGGGTTCGGAGCATGTTTCCGACGAGTACACCGCCGGTGCGGCTCCCTCATTCAGGCGGTGGAAACCACCGGGCTCCAGCCGCGCTTCGGGCATCAGCTCCGAAGCCGTGTGGAAACGCCGCGAGAAACGGCGGAAGTTCAAACGCAAGTAGAGCTCGTGCGGACGGCGGGAGGAGGTGACCGCGCGAAGCGATGCCGAAGCGGCAGGCTGACTGGCAGAGGCACAAAGTGAAGCTGTTTTGCGGTGCGGGCTGATATATTCGCTGGTCATCAAGT # Right flank : AGCACCACCACGTCGTTCACCATTGCTGGCTTTGGAGTTCCTCGGCGTTCGGGTGGTGGGCGATGGCTTCGGCGAGTCGTCGTTCGGCGGTGGGCGCGTCGGCGGCCAGCGCGCTGGCCATCGCTCCGCCCTTGGCGAGGGGCACGAGCGACCACCACTGCCCGCTCGACGACTCGACCGGATCGTCGTCCCACACCACGGTTTCGGTGGCGATCACCCGCACCCCAGCGAGACGCTCGACGCTCGTCTGCGGCCCGCCGATGTCCAACCGCTGCCGCAGCAGCGGTGCACCCTCCCGCGAGAACCGGGTCGTGCTCACCACCGACCCCGGCTGCTCGCCGTGCCGGCCGAGCACCAGCGTCTCCCGGCAGCGCGCCCGGGCGTCCGACGACAGTTCGACGAGCAGATCCGCCCGGTGATCAGCACGCGAACTGACCACCGCGGGCTGCGGCAAGTACTCCACCACGCCCCCGTCCGACACCTCGATGGTCACAGTGGAC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : GTGCTCCCCGCGTATGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 564-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYJW01000091.1 Saccharopolyspora rectivirgula DSM 43747 Contig91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 563 28 78.6 141 .....T......C.G...A..AC..... GAGCACCCAGTGACGGTAACGTTGCCTCCCTTGCTCCCCGCACACGCTGAGCAAGGACGGGTTTTGATGCTGCCTGCTTGGCGGCGGCGCAAAGTGAATCTGTTTTGCGGTGTGGGCTGCTATAGTCCCTGGTCATCAAGT 394 28 100.0 33 ............................ CAGGAACGCGCGGATGGCCACGTACAGGCGAAA 333 28 100.0 33 ............................ GCAGTCAGTGTCGCGCGCCACCGACGCGGCCGT 272 28 100.0 33 ............................ CTGCGGTTTCACCAAAACATGAGGGGGTTGAGG 211 28 100.0 33 ............................ CAAGCTCGCCACCGCGAGGCCGCGGGGGGCTGT 150 28 100.0 33 ............................ GCAGGCCGAGAAGCTGGGGCTGAAGTCGCCGAA 89 28 100.0 33 ............................ TCGCCGCAGCAGGCGTCCGTCGTCGATGATCGC 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 8 28 97.3 49 GTGCTCCCCGCGTATGCGGGGGTGATCC # Left flank : CTGTGGCGTTGTGCACCTCTCACCGCGCAGGAGCGGGGTGACAGTAGAGACATGGAGATGCCGCACAGCGGCCAGGGGGATGTGCACCACCAGGAGAGAACGGGCGATCCGGCCTATGTGTACGCAGGTGAGTGGACCGACCGCCAGGGGGTAGTGCACATCCGCAACGCCAGTACAGGCTGCACCTACTGCGGCCTGACGACCAGTTCCCGCAGCACCACACACTCGGTCGTCGGCTGCGACCAGTGCGTTGCGATCTCCATAGGCGCCTACGCCCGCCACGACTGTGGTCGGGGGTGCTGTGGAGCGGACTAAACCCCGATTACCGCGCCGGCCGGATACATCACCGTGCTTTCCGGGGATTTGCAGCAGCTCCCCTCGTACTCGCAGAACTTGCAGCCGGCGGCGACGTGGTGGCACCAGCATCGCCCCTCGCTCACCGTCCTGCAGCAGGTCCTGGAGGGGATGAAGCACCTGTAGGCCTCGCTGGCGGAGAGGTC # Right flank : C # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 7066-7339 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYJW01000091.1 Saccharopolyspora rectivirgula DSM 43747 Contig91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 7066 28 100.0 33 ............................ TGCAGATGTCGATCGAAACCTTCCTGCACCTCA 7127 28 100.0 33 ............................ CCCTTTGAGGTCGGCGATGCGCAGTCGCACCGA 7188 28 100.0 33 ............................ CGAGGGTCGGCGACGTGCCCAGCGTCGGCAAGG 7249 28 100.0 35 ............................ TGCGCGCAATCGCTTCATGCTCAGGTAGCTGATGA 7312 28 75.0 0 .......TT......T.G.A.....T.G | ========== ====== ====== ====== ============================ =================================== ================== 5 28 95.0 34 GTCTGTTCCGTGCGCACAGGGGTAGCCC # Left flank : GGGTTGAACCGATCGATTCTCGACACGTCGCCGGCAGAGTTCCGACGACAACTGCAGTACAAGGCCTCTTGGTACGGGGCCACGGTCGCTGTTATCGACCGGTGGGCACCGACCAGTAGGACGTGCTCGTCCTGTGGGGCAGTGAAAGCCAAGCTGTCTCTGGCCGAGCGCACATTTTTTTGCGAGCACTGCGGGATGGAGTTGGACCGCGATATCAACGCGGCCCGGAACATCCTGGCGTTCGCGCAATCCGCCTACCCCGGGGAGGGGAAGGCGTTAAATGCCTGCGGAGGCTCTGTAAGTCCTGGATCACAGTCTGTGGTTCAGGCTGGAGCTGATGAAGCTGGCAGACCTGCGCGGAAACCGCGCAGGTCATCCCGGGGGAGTGATCCCCCGGCTACCCCCACAACACGCGCATAACTACAGAGCAGGACTTGGGCGGGCCAGCGAAACTAATGCTGTTTCGCAGTTCAGACGTCTAAATCCCCAGGTCACGAAGT # Right flank : GCCTCCGCGGTAAATCCTGGCGAGTGCCATGATGGCGGGCCGGGTGCGGGCGGCGGATCCGTCGAGGTAGGTCTGGCTGGTGGCGATCGACCTGTGGCCGAGTTGGGCGGCGATGACGCTGGCGTCGGCTCCGGCGTAGTCGCGGGCGTGCACCGCCCAGGAGTGCCGGAGCTGGTGCGGGTGGATGAGGTGTCTGCCGCGGCCGCCGCGGCCGTGGTTGTCGGACCACAGTGGTGCCAGCGCGTCGTGCGCCAGCCGCAGCTCCTCGGTTTCGGAGTCCGGGCGGGGGATGGCGGCGAGGCGTTGGAGTAGGTGGCGGATCTGGTCGGGGTGCAGTCGCTGCCCGCGATCACCGGTGATCAGTGGCTGGTCGGCGCGGTGACCAGCGTTGACTTCCCCGAGGCGTGCCGGGGTGGCAGAGGCCTCCGGTGGCTCGATGCGCCCGGAGGTCAGGTAGGCCTCCAGGATGTCGGTGACTTCCGGCGGCAATTCCACGGTGC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGTTCCGTGCGCACAGGGGTAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 12353-11895 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYJW01000091.1 Saccharopolyspora rectivirgula DSM 43747 Contig91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12352 29 96.6 32 ............................T GCCGGTTATGCGCACTAGATCGATCCAGGGGC 12291 29 100.0 32 ............................. TCGTACATGCTCCGGCTGGCAAGGGTGCCGCC 12230 29 96.6 33 ............................A CTTATCCAGTTCCCTGGCGGCGCGGAACCGCAG 12168 29 96.6 32 ............................T TCGCCGGATGAAGTACTTCGAGAAGATCGGGT 12107 29 100.0 32 ............................. CGGGTCGCGGTGTACTTCACCAAGCATGGCGC 12046 29 100.0 32 ............................. TTCAGACGAGCTTGCAATTTTGCAGCTCATCG 11985 29 100.0 33 ............................. CCCAAGGTCACACGGCGAACCGCCTCAAAGGCG 11923 29 82.8 0 .......................TCCG.C | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.6 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : CGCGGGGATGATCCGTTTGCCAGATAGACGTTGTTTCCGTTCCTCA # Right flank : TCGGAAGCTGAGGCTGTGCCCTGTGGTGCGGAAGGTGAAGAGGCTGCAGGAGGTCAGGAGGTTGCTGAGGTCCGTGATGCGGTGAGCATTCCGCGGTCGCTGCTGCTCATCTGGCTCCGGCACTGGTCGAGGCCGCGGGTGTGGGTCGTTCAGTCGTCGGGCAGTAGCGCCAAGAGTTGGCGGTGCGTGGTACTGCTCAACAGTTTGCGATCCGCTCCTGGTGAGGGTGGTCCTGCTGATTTCGGCTTTTGGGCGGTTCCAGCGGTGCAGGTCCAGATCGGGGCTTGCACTGTACTTCTGGCGCTAGTTTTCAACGGTGCCTCCCTCCTGCTCCTCCCGTGCAGGGGCACGCTTGGATCGCAATCCACAAGCGCATCAGCGGGCCTCCACTTCGACGCACTCGGTGGCTGCGCTGCTCACTCGCTCGTTGCGGCGAAGCGGATTCTGATTTCCCCCAGCCGATGAGCAGCTCGGCGGCACCAGTACCCCGGCCGGGAACG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //