Array 1 23144-23722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPO010000044.1 Pseudomonas otitidis strain 34M NODE_44_length_37272_cov_50.5324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23144 29 100.0 32 ............................. CCATGAACCAGACCATGCAGCGTCAAACCGTA 23205 29 100.0 32 ............................. AGGTCCGCCTGAAGGATGCAGAAATTGCTCGG 23266 29 96.6 33 ............................T GCAGGAAGCTCTCCCGCTGCCCCTGCTCCAGCC 23328 29 100.0 32 ............................. GTTAGGGCAGGGCAGTACCGCGTTACCCGCAT 23389 29 100.0 32 ............................. GCGCGCATCCAGTCGGGCATTTGTCTGTTCGT 23450 29 100.0 32 ............................. CCGGTTGCAGCAGCCCCGGCGCGACCGCAGGA 23511 29 96.6 32 ........................G.... GGAGCGAGTCGGCCTCTGACCCCAGGGGCCAG 23572 29 86.2 32 .A.........ATA............... GCCATCGTTGTAGAGGATGACCAGCTAGAGCA 23633 29 96.6 32 .........................G... TGCCCGCGTTGCCGGACACTCAACCACCAGAA 23694 29 79.3 0 .....T......CT...........TT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.5 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : TGGTGATCAAGGCCGGCGCCGTCACCTGGGAAGAAGGCGTCGACTACGACCTCACCGACGCCGGGCTGCCCAAGATCAAGGCAGGCGGCAAGGCGCTCGCGGCCGGTACCGACATCACCGTCGACTACAGCCACGGTGCCCACGTCGTCATCCAGGGCCTGGTCAACTCCGGCCGCCGCTACCGCCACGTGTTCGTCGGGCTCAACGAGGCCGACACCGGGCGCCCGGTGGTGATCGAGCTGTACCGCGTGGTGCATTCGCCGGCCAACCTGCAGATGATCTCCAACGAGTTCGGCGGCCTGGACTTCACGGCAGAACTGGAGATCGACCCCAGCAAGACCGGGCTCGGCATCTCCCAGTTCATGGTGGTGAAGTACGTGGACTGACCAGCCCGGCAGGGCCGCGAAAAGCGGCCCTGCCGCCACACCGAAACGGGCTGAAAGGTTGGTGGGAAAAATAGCGGGGAATTTTCCTTTTCACGGCAACGGGTTAGATTTGGT # Right flank : TTACATAACATTCATCCGGCCTTGCGGCCGTATGTGTGCCCCACGGGTGGGGCACTGCGCATGCAACGGCTACTCGGCATCAAGCGGCGTAGTTGCGAGGCGTTTGACGTCGCCGATAAATGCATCAAACGCTCGCTCCAGCGACTTGAAGGAACGTGTTTCCGCCCCCCGGCAACTGAGCTTCCAGGGTCTGCTACTGGAGTCCACTGTTACTTCAACCCAGGTTTTAGTTTCCCAATCCAGCTCTCGGCGCGTGACAACCGGTGAAAAGCACAGCGCCAAATCAGGAGTTTTGCGGGGCTTGCCGTTCTTGAACAATCGACTGAGTTCAACGGAGTCGTCCTCGGCTTTTACATGCCACCCGGCGCGGGTGATGTCGGGGAGATGCAGGGCGAGGTGCTGCTGGAGCGTCCAGGCGCTGCGGTCCTCCGGAGGCTGGTACGGGGTGATGGGTTGGCTGGTGGCCAGCTCGATTTTCCCGATCTTGAAGAGTTTCCTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10814-10357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPO010000029.1 Pseudomonas otitidis strain 34M NODE_29_length_74930_cov_51.5936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10813 29 100.0 32 ............................. GCGGGTCTTCGGCAAACTGCGCGTTATCGATT 10752 29 100.0 33 ............................. GCTGATGACATGCGGTTCGCCATGCACCCCGTC 10690 29 100.0 32 ............................. GCGTCATAGTCAGTAGCGGTGAGATCGGAATA 10629 29 100.0 32 ............................. CCCTGGATGCGGTACAGCTCGGGCGGGGTCAG 10568 29 100.0 32 ............................. CTCGGCTTGTTCTAGAACCGGGTTTTCGTAGA 10507 29 100.0 32 ............................. AACATCAGCCGCGACGACCAACTGGCCATGCT 10446 29 93.1 32 .........................T..A GAAGAGCCAACCAGACTGCCGAAGGTCGAAGC 10385 29 75.9 0 C..........AAA...........G.GT | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.1 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : GGGTCGCATCATCCCGCTGATCGAAGAGGTGCTCGCAGCCGGCGGTATCCACCCGCCCGAGGCGCCGCCGGAGTCCGTACCGCCGGCCATCCCCAACCCCGACAGCCCCGGCGATGCCGGCCACCGGAGCCGGTGATGGCCTTTCTCGCCGTGGTCACCGAGAACGTCCCGCCACGCCTGCGCGGGCGCCTGGCCATCTGGCTGCTGGAGGTGCGCGCGGGGGTGTACATCGGCGACGTCTCGCGGCGCACCCGGGAAATGATCTGGCAGCAGCTCGAAGCCGGGTACGAGGACGGCAGTGTGGTCATGGCCTGGGCCAGCCAGAACGAGTCCGGCTACGACTTCCAGACCCTCGGCAGCAACCGCCGCGAACCGGTGGACCACGACGGCCTGCGGCTGGTGGCCTTCCTGCCACCGACCACCGCAGATTCCACACCCAAATAATCGGTAGATTTTCAGGAGGTGATTTTTATCTTTGAGAACAAGGGGTTGCAGTTGGT # Right flank : CGCGACCCTACCGCCGCTGCCAGATCTTCCGGCCGCCCTGGTCCTCGGTCACCAGGTAGGGGGCGCTGAAGCGGTAGCGGGTGGCGGGCTGGTAGTCGGTGCCGCCGTCGGGGCGGACGAGGAGGATGCCGTCGGCGGTCTGCCATTGGCCGGCGTACTGGAGGGTGCCGTCGCTGTCGTAGCTCCAGTCGGAGCCGCCGCCGACGGAGCGGCTCCATTGCTCGACGCGGCCGTCGGGGGCGAGGTGCAGGGTGAGCACCGTGTTGAAGGAGGCGAAGCTGGCGCCACCGCTGTTGATGATGTCTTCGTGGACCCAGGTGCCGACCAGTGCCGGGTCCAGGGTGCCGGCGCTGGTGCGGGTGGCGCCCGTGGCAGTTGAGGGGCTGCGCTGGAACAGCGCCTGGCGCTCCAGCACCTGGCCGCTGACGGGGTCGCGGGCGGCGAGGCGGGCGTTGAGCTGGTCGTTGCCGTAGGTGGCAGCGAGGGTGGCGATCACCTGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21116-20904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPO010000029.1 Pseudomonas otitidis strain 34M NODE_29_length_74930_cov_51.5936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21115 29 96.6 32 ............................T CAACAGCGTTACCCCGTGGTTGGCCGACGAGC 21054 29 100.0 32 ............................. TATCGCGCCGCGCGCTGCTCGGCAGCCTGGGC 20993 29 100.0 32 ............................. CCGGAGCAGACCCGCGTCGGCCAGGTGATGCA 20932 29 86.2 0 ............T.C.......C.....C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GAAGAGACCATCCTCCCGCGCCTGTACCGCGAAGCCCCGGTCAACTCCATCTGGGAAGGCTCCGGCAACGTTCAGTGCCTGGACGTCCTCCGCGCCCTGTCCAAGGAGCCCGGCGTGCTCGACGCCCTGTTCAGCGAACTGGGCGACGGCCACGGCGACGCCCGCCTCGCCGCGCAGATCAACAACCTCAAGGCCGCCTTCCACGACACCGCCGACATCCAGTACCGCGCCCGCCAGCTCACCGAAGACGTCGCCGTCGCCCTCCAGGCCAAGCTCCTGCTGGAGGCCGGCAACGCCACCGTCTCCGACGCCTTCATCGCCAGCCGCCTCGGCGGCAGCGGCCGGGTCTACGGCACCCTCCCGCGCGGCATCGACGTCGAAGCCCTGGTCGCCCGCAGCACCCCGCACCTGGCCTGACGCCACCCTGGCAACAGGGGAAAACAGCCGGTAGATTTTCCGCTGCCGGCTTTTCCCTCTGGGATCAGCGGGTTACGGGAAGG # Right flank : ACCCGAAACCGGAGCGGCCAGCCCCACTGCGCGGCCTGCGTAGGATGGGGTGAGCTTGGCGAACCCCATCACCCGGCCGCGCCCCGGCCCTAGGCCGCCCGCTCCGCCAGCCGGCGCTGGCCGGTCAGCGCCGTGGCCACGAACAGCGCTGCCGCCAGGCTCAGCGCCAGGGGCAGGCCGTGGGGGCCGGTGCCCATCAGCGCGCCGCTCAGCAGTGGCCCAATCAGGCTGCCGATGCCCCACAACATGCCCACGCAGGCGTTGGCGGTGACCAGGTCCTGCCCGCTGAAACGCTCGCCGATGCGCACCAGCGCCAGGGTGTAGACGCCCCCCGCCACCGCCCCCAGCAGCACAAGCGCCGGCCACAGCAGCGTGGGCCGGGTGATCAGCCAGGGCAGCGCCATGCCGATGCCCAGCGCCGCCACCCCGCAGACCAGGTGCAGGCGGCCGCGCTCGGTGCGGTCCGACAGCCAGCCCAGCGGCACCTGGCAAACCATGTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.80,-12.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //