Array 1 18805-17556 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGN01000053.1 Escherichia coli strain 554 BN4_554_1_(paired)_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18804 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 18743 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 18682 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 18621 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 18560 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 18499 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 18438 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 18377 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 18316 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 18255 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 18194 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 18133 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 18072 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 18011 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 17950 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 17889 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 17828 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 17767 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 17706 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 17645 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 17584 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45402-44354 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGN01000053.1 Escherichia coli strain 554 BN4_554_1_(paired)_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45401 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 45340 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 45279 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 45218 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 45157 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 45096 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 45035 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 44974 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 44913 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [44887] Deletion [44873] 44871 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 44810 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 44749 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 44688 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 44626 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 44565 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 44504 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 44443 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 44382 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //