Array 1 81806-81950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUJ01000003.1 Bifidobacterium choerinum DSM 20434 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81806 29 100.0 32 ............................. GTCCACGAATCCTGGAACGAGCCGGTGGTCTG 81867 29 100.0 32 ............................. GTGACATCGGGGTTGTCTGAGCGTAGGCAGAA 81928 23 79.3 0 .......................------ | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTGCTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CAACGATGTGCGCCTGAAGAACTTCATCGAGATGCGGCACTGGGATTCACTGCCGGTGGAGCGCGCCGAACGGCTCACGCAGATCGTAGGCGACCTGTTCTACGATCCGGAGCGCCGCGGGCGTCTTGAATCGTATTTCAGTGGACTGACCGGCGAGGACGTGCACGCCGCGAAGGCCGTGCTGCAGTCGCGCGGGGGAGACGCGAAACCGTACGACCGGCCGATGGAGTACTGGGCGGAGGTACTGGGCGTCGGGGATACGCTTGATCAGGTGCCGGGGGATGCGATGCGGCCGGAGGTAAGGCAGGGGTAGGAGGAGGCTACTCTAGAAGAGTCCTGCAATTGCGGGAGTGATCCCCCTGTATAGATGTACTTCGGACATGCCCCGCATATGCGGGGAATGATACAGCGGAGGAGGAGATGCGAAGTGCGCCGTGAAAAGTGAATGAAAATGCTTCTCGCTGATCAATGATATGTTGGAAACACAAGGATTTCTTAGT # Right flank : | # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30-1945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUJ01000004.1 Bifidobacterium choerinum DSM 20434 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 30 29 100.0 32 ............................. GTGACATCGGGGTTGTCTGAGCGTAGGCAGAA 91 29 100.0 32 ............................. GAAAGCGTTGAAACCATTGGGATGACGCTACA 152 29 100.0 32 ............................. GAAAGCGTTGAAACCATTGGGATGACGCTACA 213 29 100.0 32 ............................. GAAAGCGTTGAAACCATTGGGATGACGCTACA 274 29 100.0 32 ............................. GAAAGCGTTGAAACCATTGGGATGACGCTACA 335 29 100.0 32 ............................. TCCCGCCGTAGGGTCCGTCTCCACGTAGGGGA 396 29 96.6 32 ............................A CCGGCCCGAAAAATGGTCAAGAGGGCAGGTGC 457 29 100.0 32 ............................. TTCAACGACTGCGCACTGTTCGCCGAGTCGCC 518 29 100.0 33 ............................. GCGACAAGCCCACGCTTATACGGCATCAAGGCG 580 29 100.0 30 ............................. ATCGCGTATTCCCGGCCGAACGGAACGGCC 639 29 100.0 33 ............................. GCGACAAGCCCACGCTTATACGGCATCAAGGCG 701 29 100.0 30 ............................. ATCGCGTATTCCCGGCCGAACGGAACGGCC 760 29 100.0 32 ............................. GGGTTGCTGTCGGCCCATCGGTCGCAGTCGAA 821 29 96.6 32 ............................A CTGGATGACGGGCACACGCCTGAGCTTGTGCT 882 29 100.0 32 ............................. AGGTGTCGTGCCGGCTGGTTGGGGCCGTGTGC 943 29 100.0 32 ............................. ACGAAATTATCGGTGGAAAACATCATGCAGCA 1004 29 100.0 30 ............................. ATCGCGTATTCCCGGCCGAACGGAACGGCC 1063 29 100.0 32 ............................. GGGTTGCTGTCGGCCCATCGGTCGCAGTCGAA 1124 29 96.6 32 ............................A CTGGATGACGGGCACACGCCTGAGCTTGTGCT 1185 29 100.0 32 ............................. AGGTGTCGTGCCGGCTGGTTGGGGCCGTGTGC 1246 29 100.0 32 ............................. ACGAAATTATCGGTGGAAAACATCATGCAGCA 1307 29 100.0 32 ............................. ATTGGGCTGACGCTACAAACGACCATCTCGCG 1368 29 100.0 32 ............................. ATTGGGCTGACGCTACAAACGACCATCTCGCG 1429 29 100.0 32 ............................. ATTGGGCTGACGCTACAAACGACCATCTCGCG 1490 29 100.0 32 ............................. ATTGGGCTGACGCTACAAACGACCATCTCGCG 1551 29 100.0 32 ............................. ATTGGGCTGACGCTACAAACGACCATCTCGCG 1612 29 100.0 32 ............................. AGGCGTCCTTTGATGTGGCGTTTCGGCCAGCC 1673 29 100.0 32 ............................. GTCAGGGCAATCGTCCGTTCGCCGAGGTCGCG 1734 29 100.0 32 ............................. TCAAACCAAACAAGCGAAGGAAAGTGATTGTG 1795 29 96.6 34 ............................G AACAGACGCCGCTTGTTTGAGTTAGCCACGTTGT 1858 28 93.1 32 T....................-....... CTGAGCGGGTTCATGAAGGCGTTCACCGATTT 1918 28 82.8 0 .......T..........T...-C.A... | ========== ====== ====== ====== ============================= ================================== ================== 32 29 98.8 32 GTGCTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CACGAATCCTGGAACGAGCCGGTGGTCTGG # Right flank : CGGGTGCGGTTGCCGAAACGGCGGGGCGGATGCAGGAGTCGGCTCAAGTCGTCTCTGTCGAAGAGAGGAGCATACCCGTTTCCGATGCATCCGCAAATACGGAAGAGGATGAGGGGAACCATGGTGGGCAGAATCCGACCGTGGTTTCGGCCCCTGCTGTCCAAACCGGGCCCGTTGCCGCCGCGGTCGCGCCGGCCGGACCTTCGACGCCCGCTGCGCAGCCCGCTGTGCAGGCTGATGGGAAGGTCGCGTTGACCCGTCTCCTGCAGCCTCTTCATGATGAAGGTCTTCTGGACAAATCCATGACCGCGCAGAAGGCCAATCCGATTCTGGCCGCCAAAGGGCTGATCATCCATACGGAGCAGGGCTACTGGATTCCCACTGACTACGGCAGGAAGCTGGGCGTCGAGGCCAGAAGCAATGAACGGGGCGCCACTTGGCCGCTCTACCCACCCGAGCTGGGCATGCTGGTCCTCGGTATGCTGCTATAGGGACCTGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //