Array 1 32083-35552 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQP01000021.1 Treponema denticola strain Marseille-5-CSURP7640, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 32083 36 100.0 30 .................................... AAAAGCAAGTGAAGAAAGCACCTAGCCGTA 32149 36 100.0 30 .................................... CACAAAAGACAAAGCGGACATCTTGAAGGA 32215 36 100.0 30 .................................... AGAACAGAACATAGGCGGAGTAAACCGCTC 32281 36 100.0 30 .................................... GCGTGTAGCGCTCTAATCCTTTGTCATAAA 32347 36 100.0 31 .................................... TTATAAAGGGCGGTCTTCACGGCTCTACTAT 32414 36 100.0 30 .................................... CCCAATTGTCATCTAGAATCCGATAAGGCA 32480 36 100.0 30 .................................... AACTCTTATCGACGTTAAAAAGTATACAAT 32546 36 100.0 30 .................................... AGTTACGCAGAAAAAATCATAGAAAACATA 32612 36 100.0 30 .................................... GGTTACCAATCTTAATGGTGCAACTGGCTC 32678 36 100.0 30 .................................... CGGAATTACACACCCTTGAACTTTGCTGGT 32744 36 100.0 30 .................................... ATAGTCTTTTACATTTGGATTTGAAAGATA 32810 36 100.0 30 .................................... CGAACAAACGGAGGGATTTTTCCAAGAATC 32876 36 100.0 30 .................................... AGTGGATTATTAAAGTATTTACAGCTTCAG 32942 36 100.0 30 .................................... TACGGAAATGAAATACTGCTTTCAGGAAAG 33008 36 100.0 30 .................................... CAGGGGCAGACCCAAGAGGCTCTGTGACAT 33074 36 100.0 30 .................................... AAGGAATGATTCCGATTTTTATAGGAGGTT 33140 36 100.0 30 .................................... TCGTAATTACGTTCCCTTAAAGTTCGCTGG 33206 36 100.0 30 .................................... TCTTCTTATATTAAGATGATTTCTGGAAGG 33272 36 100.0 30 .................................... TTATTTGATTATTAATCATGCCAAATAAAT 33338 36 100.0 30 .................................... TTTAGTATTTGGTTATCAGGGGCGCTTTGA 33404 36 100.0 30 .................................... GAAGTTTTTCACAATGGAGGAATAAGATAT 33470 36 100.0 30 .................................... ACAAGCCGTTTGAGAGTTGTGGTATTAAGT 33536 36 100.0 31 .................................... AAAAGACCTTCTAGCCTCAACATCCGACGTG 33603 36 100.0 30 .................................... CTTCCGAGTAATCTTCAGACACATCTGGAG 33669 36 100.0 30 .................................... AGAAAAAAAAGGCGATGACTCCGAAGCGGA 33735 36 100.0 30 .................................... AGATGACGGTTTCGAAACCGCCAAAATGAC 33801 36 100.0 30 .................................... AGCCACGAGCTTAAAAGCCGTAGTAGCGTC 33867 36 100.0 30 .................................... TGGAGAAATAATACAATGCCTGCCGGTAGA 33933 36 100.0 30 .................................... AGATGCCATCGCTCTGGGAGACGTTGAATA 33999 36 100.0 30 .................................... ATTTTAAAAAGCTTAGTAAGATTAAGGGTC 34065 36 100.0 30 .................................... AAATCGTCAAAACTGATGCTGTGATTGATA 34131 36 100.0 30 .................................... AATTGACTGGTTTACAGTTGGATAATGGCT 34197 36 100.0 30 .................................... ACCTTTAAACTTAGCCTCCGCGGGTAAATC 34263 36 100.0 30 .................................... TTGTAAGGGAGCCGAATATATTAAGGCAGG 34329 36 100.0 30 .................................... AAAACAACGAAGAATGCCAACACAATATGT 34395 36 100.0 30 .................................... GATAATTTAAGCGAGACTTTGACTAGTAAG 34461 36 100.0 30 .................................... CCCAATTATCATCCAAAATTCTATATGGGA 34527 36 100.0 30 .................................... AAAAGAGAAGTATCAGGATGCCATTTAGGG 34593 36 100.0 30 .................................... TCCGAATAAGTTTGAGAGGTGTAGCCGGCA 34659 36 100.0 30 .................................... ATAATTTGTGGGGGTTTGCGTTTCACAGTT 34725 36 100.0 30 .................................... TCACCTGGGACAACCTCATCACACATTACA 34791 36 100.0 29 .................................... TCGGAAGGGAATTCATAAAGTGCGAGGTC 34856 36 100.0 30 .................................... TTGGTTATTCGACTTTTGATTTAAGTTATC 34922 36 100.0 30 .................................... TATAGGAGGTTTGGTGATGGAAAAATCGAA 34988 36 100.0 30 .................................... AACCACGCTGCCTATAAGGAAGCGCAGTCG 35054 36 100.0 30 .................................... AACTCTTGTCTACACTATATAGCACACAAT 35120 36 100.0 30 .................................... GTGGACATGAGAAGCGCAATTAAAAATGTA 35186 36 100.0 30 .................................... AAGACCAGTCAAACGCTCTCTTTCAGATTG 35252 36 100.0 30 .................................... AAGACCAGTCAAACGCTCTCTTTCAGATTG 35318 36 100.0 30 .................................... TCTTTCGTTACTTTAACTTACAGTGATGAA 35384 36 100.0 31 .................................... TGAAAAAAAAGAAAGGCCTTTAAGTGATGAA 35451 36 100.0 30 .................................... TGAAAAAAAAGAAAGGCCTTTAAGTGATGA 35517 36 86.1 0 ..........................ACGAG..... | ========== ====== ====== ====== ==================================== =============================== ================== 53 36 99.7 30 GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC # Left flank : TATTTCCGATGAATATAATTACCTAAAAACATGCACCATAAAAAGTGCGATATTAAAACATATAGACGATGTACTTCTTTCTTTGGATATACCTCTAAAACGGAGTGAAGAACTGGATTTGATCAGCATATTTAAAGCTGTTAATATCTCTTTTGAAACAGAATATACAAATTTACTTGAAAAAATTATAGATTATATAAGCGCTTCTGTGGAATTAAATAAAATAAAATGCTTTATTTTTATAAACCTAAAACAGTTCTTAAATTTCAAAGACTTATCCGAGTTATACAAATTTGCCCGCTATATAAAAACAAATCTATTTTTAATCGAGGGGGTATACACATCTACAAAAGAAGATTGTGAAAAATCATATATTATTGATAAGGACCTTTGCGAAATATATTGACAATAAATACTTCTCATGGTAGTATTAAAAAGTAATCATCTTAGACTACCGCTATCAATAGTGTGATAGGCTCTCTACCTACGCCATATCTGAC # Right flank : CACAATGCTTAATGGAACCTCGAAAAATTTCAGTTTTTGAGGTTCCTCTTGATTTTCATCATGTATAAAATATAGAATATTCATTTATAATAGGCTTTCCTTTTTTTTGATTTTTCTTTATAATATAGATATGGCTAAATTTAAACGGAAAACAAAAGAAGAACGGACGTATGAGATAATAGAAGCTGCAAAAAAGGTGTTTTTGAAAAAGGGCTTTCATAATACTACGATGGAAGATATTGTTGCCGCTACAAGCCTTTCAAAAGGAGGGGTTTATCAGTACTTTAAAAGTACGAAGGCTATAATGTTTGCCATAATGCAGGAAGGAAACTATTTTCGATATAGACGCAACGAAGAAATCTTTAGTTCTGCAAAAAAAATTGATGATCCTTACGAAATTGTAACCCAAGCCTTAGAAGCAAAACTATTTGATAATGTTCCCGAAAAACGGCTTTATCTAATGTTTCTTGCCGAAATTCTATATGACAAAGAATATGAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //