Array 1 162648-161946 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHII01000005.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N46832 N46832_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162647 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 162585 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 162524 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 162463 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 162402 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 162341 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 162280 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 162219 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 162158 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 162097 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 162036 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 161975 29 96.6 0 ............T................ | A [161948] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16643-15212 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHII01000015.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N46832 N46832_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16642 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 16581 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 16520 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 16459 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 16398 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 16337 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 16276 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 16215 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 16154 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 16093 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 16032 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 15971 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 15910 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 15849 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 15788 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 15727 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 15666 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 15605 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 15544 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 15483 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 15422 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 15361 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 15300 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 15239 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //