Array 1 5474-4977 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYLZ02000157.1 Shinella sp. DD12 SHLA_56c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 5473 33 100.0 34 ................................. GGCAGGTCGATGCCGAAGCCCTTGAACTTCTTGG 5406 33 100.0 34 ................................. CACAACCCGCCACCATCAAGGCAGCGGTCATAAG 5339 33 100.0 33 ................................. GCCATCCGCCTGCATCCATCGTCGTCCTGATGT 5273 33 100.0 34 ................................. TTTCGACGGGCCGACGTAGATGATCGGCTTTGGC 5206 33 100.0 32 ................................. CGCCTCCGTCGCCTCAGCCCGGATAGACTTCA 5141 33 97.0 33 G................................ TTCCGCGCCAGGCCGCTCTTCATCGCGTTGGTG 5075 33 100.0 33 ................................. ACGACGATCGGCAACCGAAACGAGCCCGTGGTG 5009 33 75.8 0 G........................GAAA.CGG | ========== ====== ====== ====== ================================= ================================== ================== 8 33 96.6 33 CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Left flank : ACGCGCTGTCCTTCGCCGATATCCCCGACGCGGATGCCAGCAAGGCGACCTCGATGAGCGCCGTGCTTCAACAGATCAGCCTGGCGCTGGGGGTCGCCGTTGCCGGCGCGATCCTCGAAATCGAGACCGCGCTGACAGGCTCCCCGCTGGAACTGCGCGATTTCCAGATCGCCTTCATGGTCATCTCCGCCCTGACCCTCGCCGCCGTCCTGCCCTTCATCACCATGGCCAAGAATGCCGGCGCCACCGTCTCGGGCCATCGTCTGCCGGGGCCGGACGAGGAAGCGGCAACGGCGAAGTAACCCGCCCCCACCCGCAAACCGGCGCGAACCCCAAGCGTGCCGCAAATCCCCGGCAGGTTCGCACCTGCCCTATCTTCTTGACGTTTTTGGTTCCGCTGCCTCAGCCGCTCTCACCCCGACGCAAAAAGGCGCGCCGCACCGCCCATCCGCACCAGCCCCCATCTTTTGTCCGTGCGAACAATGCACTAAACCTACCCC # Right flank : CGGGTTGCTGGAATATATCGAGTGGTCGGAGACTTCCGGCCCGGCGCGGGCTATTCGGCCTGCTCGCAGACGGCAGCGAGTTTGTTGCCGTCGGGGTCGCGGATGAAGGCGGCGTAGAAGGTGGCGTGGAACGGGCGCAGGCCGGGAGCGCCTTCATCGCTGCCGCCGGCAGCTAGGGCCGCGGCGTGGAAGGCATCGACGGCCGCGCGGGTCGGGGCGACAAGCGCGATGGTCACGCCGTTGCCGAAGGTGGCGGGTTCGCGGTTGAACGGCTCGACCACCCAGAAGCGGCAGCGCACGTCGCCCTCCGCCGCATAGCCGATCTCACCCGGCGCCTGCTTCTGCCTGGCATAGCCGAGCAGCGGCAGGACCGCGTCATAGAAGCGGCCGGCATGGTCCAGATCGTTCGTGCCGACGGTGGTGTAGAGCAGCATCAGGCGTCCGTATCCTCTTCAGCCGCCTCATCCTTCGCCTTGCGCCCCTTGAAGCCCTTGGCGAGC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46923-45184 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYLZ02000213.1 Shinella sp. DD12 SHLA_19c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 46922 31 96.8 36 ........T...................... ATTGCCGCCCGGACAAGCGTCCGGCCGACAAGGCCG 46855 31 96.8 35 ........T...................... ATAGAAAACGAACACGGCAACGATCACGAGGCCTT 46789 31 96.8 34 ........T...................... CATCTGGCGGATGGCGAGTTACCATCCTCGTCCC 46724 31 96.8 34 ........T...................... CTCGTCGATAGCCTGGATCGAGATCTGAACGGAG 46659 31 96.8 34 ........T...................... GGGTGAAACAGACAGGCGTCGAGGTAGATCAGGC 46594 31 96.8 36 ........T...................... CTCCGCTCTGAACGCGTCAAGGAAGTTCAGCGGCTC 46527 31 96.8 35 ........T...................... TCGATGCCGAAACGAAAGGGTGTCATGCCGGAGTA 46461 31 96.8 35 ........T...................... GTCTACTTCATGCGTGGATCCGGCAAGGAGATGCC 46395 31 96.8 35 ........T...................... AAGGTCTATCGAGATTGCATCACGACGCCGCGCGA 46329 31 96.8 35 ........T...................... ACCCGAAACCAGCAGGTGATGCATGACGATGGCCT 46263 31 96.8 34 ........T...................... AACACGTTCTGGGCCTCATACCCGCGCCGCATTT 46198 31 96.8 36 ........T...................... ATCTCCTTGCGCCAAGACGCTCGAAAGCCGCTGGAA 46131 31 100.0 37 ............................... CACGGTGCGGGAATGGGCCAGACCGGGCAAGGAGCGG 46063 31 100.0 35 ............................... GTCACCGATGACCTGAATGTTGACCGGCAGGCCGA 45997 31 100.0 35 ............................... TCCAAGTAATGGCATCCTGCATTACATCCGCCACC 45931 31 100.0 32 ............................... CTCCGGCCAGGAGCTGGTTTCCAAAACGGCCG 45868 31 100.0 36 ............................... TATATAGGCCCGCTGCAGATTCTTGCTCTGCGCCAG 45801 31 100.0 35 ............................... ATCACGACGCGGTCGAAGATCGGCTCCGGGTCCAC 45735 31 100.0 34 ............................... AGGGCCCATATAGCCTGTCGATTGCCGCCCAGCG 45670 31 100.0 34 ............................... TCGGCATGGTCAAGCTGATTTTGCAGGCTGGTGT 45605 31 100.0 34 ............................... GGCAAGGGTTTCGGAGATATGTCAGAGGCACTGG 45540 31 100.0 35 ............................... ATGTCGCGCTCCCAATAGGCGCGCCCGCCGAAGAT 45474 31 100.0 33 ............................... TCAATCGTCGGCTGGATAGACCCCGCACCCTTG 45410 31 100.0 34 ............................... GCATGCGAAAACTTGACGATGCCGAAAGGGTCGG 45345 31 96.8 34 .C............................. CAGATCACGAGCCGCCGAGAGTATGAGCGCCTGG 45280 31 96.8 35 ..........C.................... AACCGTATAAGCAAGGGCTGGCAGCATGACCAGGG 45214 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 27 31 98.3 35 GTCGCCTCCTTGCGGAGGCGTGGATTGAAAC # Left flank : CTATGTTGGTTCTGGTGACCTATGATGTGCGTGTGAGCGAAGGAAAGGGCGCAGCCCGGCTGCGGGCTGTGGCAAAAGCCTGCCGGGATTTCGGCCAGCGCGTGCAGTATTCCGTCTTCGAGATCGAGGTCGACCCCGCCCAATGGGTCCGCCTGAAGGCGCGGCTGGAGGGTATCATCGATCCGGCGGTGGACAGCCTGCGCTACTATCATCTCGGCGCGAACTGGCAGCGCCGGGTCGAGCATGTTGGCGCCAAGCCCGCCACGGATCTCAACGGCCCGCTGATCATCTGACGGCCCTGGCGATCTCACCCGGCCTGCCCGTGCGAACCCCAAGCGTGCCGCGAAATCCCGCGACGTTCGCACCGCCTCCCAGACGTTGAAATTCCACGCTCTTCCTCTCCAGCCCTTGGGGAGACCCGGAGGAACCCGTCCCGGTTCCCCTCGTTCCGCACATCCAGCCCTTCCCGCCGAGCAAAATCCATGGTCTACAACCAGCCA # Right flank : GGTGCCACCGGCATGGGCTGGATGGTCGCCGTCTGGGGGGCGCCCCAGCGCCGGAGCGGGGAATGTCCGCTCCGGCGTGCCTTCCGTCAGCCGGCCTTCAGTACGTCGGCAAGGGCGTCCACCAGCATGTCGGCGTTTTTGCGGGAGAAGACGAGAGGGGGGCGGATTTTCAGGATGTTGGCGTTGGGGCCGGAGGCGCTGATCAGGATGCGGCGGGCGCGCAGGCCGTTGACGATGCGCGCCGTCAGGGTGGCGTCGGGCTGTTTCGTCGTGGGATCGGCGACGATCTCGACGCCGATAAAGAGGCCCGAGCCGCGGACGTCGCCGAGGGCCGGGTGGAGGCGGGAGAGCGCCTTGAGGCCGTCCATCAGGTATTGGCCGACATCGAGGGCATTCTGCTGCAGGCCCTCCGTCCGGATGGTTTCCAGCACGGCCTTGCCGGCGGCGGCGGCAATGGGGTTGCCGCCGAAGGTGTTGAAGTAGCGGGCACGGGGGCCGAA # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTTGCGGAGGCGTGGATTGAAAC # Alternate repeat : GTCGCCTCTTTGCGGAGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //