Array 1 1169-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEHJ01000024.1 Bifidobacterium dentium JCVIHMP022 contig_180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1168 36 100.0 34 .................................... TGGCCGCATTGAAGGCCATGCTCGACACCCTCGG 1098 36 100.0 36 .................................... GTTCCTGTTGATCCACTCTCGTAGGAGCTGCTCATA 1026 36 100.0 35 .................................... TAGGTGCCGCCAACGTCTACGCGAAATTCACGGAA 955 36 100.0 36 .................................... CTTATAAGATTGCAATTCGCAATGACGCATCCGACG 883 36 100.0 35 .................................... GTTCCTTTCCTTGTTGTGGTGTGGGTTGGTTATAG 812 36 100.0 35 .................................... GTTTTTTGAAAACTCCAATCCGCGCTTTGTTGTGC 741 36 100.0 36 .................................... GAGTTGGCTACGTTTGCCGAAGTCAAAGCCTTCTGT 669 36 100.0 35 .................................... GCGGCTGAAAACGGGAAAAACGGCGACGCTCACAA 598 36 100.0 37 .................................... ACCCGTCTGCGCATTCCTCAACGCCTCGTCCACGCTC 525 36 100.0 35 .................................... TTGCCTGTAGTTACGTCGCCATTCTGTCCATTGCT 454 36 100.0 36 .................................... GAAGGCACGTGAGGACGGGGACCCCTATGTCTACAT 382 36 100.0 36 .................................... CCGCCCTCGACGAAAAGGTCACCGCCCTTTCCGACC 310 36 97.2 36 .......................C............ TACCGAGTCCTCGAGCATCACCTGGCGTAGTTCGAC 238 36 100.0 35 .................................... GGGGTATGCACGCGGTAGAAGCCGCCCTTGCGCGC 167 36 100.0 37 .................................... CCACGGAAGAACTCGCCAACCTCATCGCAATCTGCTT 94 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 16 36 99.8 36 TCCTCAATGAAGTCCTGAGCATTACTGCTCAGGAAT # Left flank : TTACTGCTCAGGAATACTGTGTGAGCGCGGTCTGCGAATCATTGTAAGC # Right flank : TGTTGGCTGATGACGTGTTGTCTGGTGAGCCGACGGCTGTCCTCAATGAAGTCCTGAGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTCCTGAGCATTACTGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 330-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEHJ01000017.1 Bifidobacterium dentium JCVIHMP022 contig_181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 329 36 100.0 35 .................................... GTATCAGTTCACCCGCTTTGACCCGCAGGACAACC 258 36 100.0 39 .................................... AATCAATTCCAATGGTTGAAGATCACGACGCCATCCCAA 183 36 100.0 34 .................................... CGACTGTCTCGACTCACTGACCACGAGTAAGGTG 113 36 100.0 34 .................................... GACACAAATCACGCGCACACACCGGCTCCAAACA 43 36 94.4 0 ..................................CG | AGGA [14] ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 98.9 36 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : CGCTTATGATATCAACGATGATCGCCGGCGTAGTCATGTGGCAAAAATACTGCAACGCTGCGGTGAACGATTGCAATACAGTGTGTTTTTGCTAAGAGTGCGTCCATCAAAGATGCTTCAGATTCAGAATCTGCTTGAGTGTGAAATTGATGGATCCTGTGATTCCGTGGTTGTTTGTTTCCTTGGGAAAGAGGAACAAGCGAAAGATGGGATGAACTTTCTTGGCAGGCGTGGGTATAACGATTTGGATATTCCTACTGTCATTTAGCGGTTTTATCACATATGGAAATGTTGTTTGAAAACTAAAGAGTGTGTCATGCTGATTCTTGATATGCGAGAGCTGAATCGGTGGAAATGTAAAGTGGTAGCGCTCGCACCATATAGGATAACGACTCATATGTGTTTGCATCGTAAATGATGGTTGTTCAAGTGTGTGACTACAGCGAGTTCTCGCAAACCTCTTGATTGAGCTAATCGATAGGCTGAGTTAGAATGAGGCC # Right flank : GGCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //