Array 1 181498-181892 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSF01000006.1 Bifidobacterium longum strain TF06-12AC TF06-12AC.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181498 29 86.2 32 .C..........GG..............T GGCGTCGTGTTATGGCTATGCACGTTTGTGCT 181559 29 86.2 32 .C..........GG..............C ATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA 181620 29 96.6 32 .C........................... AAAGCGCCATTCGAGGATCTCGATGTCCATAA 181681 29 100.0 32 ............................. AACGAAAGTCCTGAACATCTCGCAGATTTTGC 181742 29 96.6 32 ........T.................... CGTCGGCCGAGCTCAATCTGGGTGATGCCTTC 181803 29 96.6 32 ............................T TGGAACGCGCCGTTGCCTGTACTGCAGGCCGA 181864 29 89.7 0 .......T..T.................T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.1 32 ATCTACCCCGCACACGCGGGGATAAACCG # Left flank : TCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCGCCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : TGTGAACCACTTTTATTGACATCTGACTTTTATCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAATCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACCG # Alternate repeat : CTACCCCGCAGGCGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185612-186189 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSF01000006.1 Bifidobacterium longum strain TF06-12AC TF06-12AC.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 185612 28 100.0 33 ............................ GTGAGTGGAAGTCCTGCATGGCGTATCGCCAGG 185673 28 100.0 33 ............................ TCCCATAGCGCACGGCCTTTTCGCCGTCACAGG 185734 28 100.0 33 ............................ GGAAGGTCGCCCCTACGAGTGCATCGAGGTCAA 185795 28 100.0 33 ............................ GAGCGAGCCAGCCCCACCAAGGAATGTAGATGC 185856 28 100.0 33 ............................ CTTTCACCACAGAGCATACACACATACATGTAT 185917 28 100.0 33 ............................ GGCTCCCGACCTTATCGGACGCCAGAGGATTCC 185978 28 100.0 33 ............................ GAACCCCTTGGACGATGCCATCGAAATCACGGC 186039 28 100.0 34 ............................ GTGGACGACATGACCCCCCAAAACGAGGAACGTC 186101 28 100.0 33 ............................ GCAGATCACGTCGGTGGGACGCAGCTTCATGGC 186162 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 100.0 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CCCCTGTACCAGTTCACGATTGCCGCAATCATCCATGAGTGGGTGCAGGAGCATCTTGAGGAGGTGGAGAAGTAGATGGCGGGTAACTCAAATCTGGGTGCCGCGAAAGACGCAAAGAACGACGAGTTCTATACGCAGCTAACGGACATAGAGAAGGAGCTTCGTCATTATCGCAAGCATTTCAAGGGCAAGACGGTGCTCTGCAACTGTGATGACCCGTTCGAGAGCAACTTCTTCAAGTATTTCGTGCTGAACTTCAACCGCCTCGGGTTGGAGAAGCTGATTGCGACATGCTACGCGACATCACCCATCATGGGTCAGCAGCTTTCGCTGTTTGACGTTGTGGGCGGCGAGGAGGAACAGCGCAACAAACCATACAAAGCTGTGGTGACGAAGGTATATGACACGACGGGCGATGGCGGCGTTGATATGTATGACGTCGCGGAGCTGTTCAAGCAAGGGGAAAATGAACTTGTCGAGCTTGAAGGTGACGGAGATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //