Array 1 78600-78369 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSBJ01000014.1 Streptomyces sp. A1136 NODE_14_length_182477_cov_190.895728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 78599 24 100.0 45 ........................ GGTCCGTCTCCGGGCCCTTGGTGGAGCCCTCCCCGTCCTCCTCGG 78530 24 95.8 45 ....................G... CGGAGGTGTGTCGGTCCGGTTCGGAGTCGTGGCCGCCCTGGGGTC 78461 24 91.7 45 ..TC.................... GGTGCGCAGGGGTACCCGGCTCCGCGTCCTCCTCACCCTCCCGCG 78392 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================= ================== 4 24 96.9 45 GACTTTTGTCCGCGGACAAAAGTC # Left flank : CTTGGGGTCGATCTTTGTCCGCGGACAAAGATCGGTGCGTCGGGGTACCCGGCTCCGCGTCCTCCTCACCCTCCCGCGGACTTTTGTCCGCGGACAAAAGTCGGGTGGCGGGTGCGTCCGACGCGGCCGCTCGTCACTGCCCAGTGCTTCGACTTTTGTCCGCGGACAAAAGTCGAGGCCTACCGCGGTCTTGCGGTAGGCCTCGATCGGGTCGGTGGGAGCTCAGCTTCGCCGGTTGTTCTCGATCAGGAGCACCGTCAGCTCGGCGCGGTGCTTGGCTGACATGTTGGTCCGGATCGCCTCGTACATGGCCTTGGGGTCCTGCCACGGAGCCGGCGTACCGTCCGTCGTCCGGGTCTGCGACGGGATCACGTTCTCCGGTTCGCGCCCGCCGCCCGGCTGGGAAAGGGAGGGTGCGCGGACCGGCTCGGCGACCGGGGCAGCCGGCTGTGCCGGTGCGGGTGCCGGTGCCGACATCGGCGGAACGCTCTCCGTCGCCC # Right flank : GAGACGGCTGCGCGACCGGCTCCGAGCCCACCGGTACTCCCCCGGCCAGTCTCGCGCCCGGCTCCTGCACGCTGCGCAGGATCTCCCGCTGGGCCGCCTTCACTTCCGCTTCCTGCTGCTTGTTCTGCTGAAGCAGAGCCAGAAGGTCGGCCGCGCCGATGCCGGGCTGTTCCTTCGCCTTACGGGCCAGCAGGCGACCGTCACGCTCCGGCAGTTCGCCCGAGCTGAGCATGAGCTGGATCTCCTCGGGGAGCTCCAGCAGCACCAGCTGGTTCGTCACCCACGACGGGGAACGCCCCAGCCGCTCGGCGGCCCGGGACTTCGCCCCGTGTTCGCGCCCCTCGTCGCCGGCGCAGGTGTCGACCAACTGCTGCACGCCACGGGCGCGCTCGATGACGTCGAAGTCCTCGCGTTCCAGGTTCTCCGCGAGGAGGTGGTCGATGAAGTCGGTGCGGGAGGCCGCGAGGTCGTCGCGCACGACGAAGTCCAGGGCCTCCAGC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTTTTGTCCGCGGACAAAAGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 78924-79228 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSBJ01000014.1 Streptomyces sp. A1136 NODE_14_length_182477_cov_190.895728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 78924 26 96.2 46 T......................... GAAGCACTGGGCAGTGACGAGCGGCCGCGTCGGACGCACCCGCCAC 78996 26 100.0 43 .......................... CGCGGGAGGGTGAGGAGGACGCGGAGCCGGGTACCCCGACGCA 79065 26 84.6 43 ....TC................GA.. GACCCCAAGGCGGCCACGACTCCGAACCGGACCGACACACCTC 79134 26 92.3 43 .G...C.................... CCGAGGAGGACGCGGAGGGCTCCACCAAGGGCCCCGAGGCGGA 79203 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================== ================== 5 26 94.6 44 CCGACTTTTGTCCGCGGACAAAAGTC # Left flank : TACCCCTGCGCACCGACTTTTGTCCGCGGACAAAGATCGACCCCAGGGCGGCCACGACTCCGAACCGGACCGACACACCTCCGGACCTTTGTCCGCGGACAAAAGTCCCGAGGAGGACGGGGAGGGCTCCACCAAGGGCCCGGAGACGGACCGACTTTTGTCCGCGGACAAAAGTCGGGCGACGGAGAGCGTTCCGCCGATGTCGGCACCGGCACCCGCACCGGCACAGCCGGCTGCCCCGGTCGCCGAGCCGGTCCGCGCACCCTCCCTTTCCCAGCCGGGCGGCGGGCGCGAACCGGAGAACGTGATCCCGTCGCAGACCCGGACGACGGACGGTACGCCGGCTCCGTGGCAGGACCCCAAGGCCATGTACGAGGCGATCCGGACCAACATGTCAGCCAAGCACCGCGCCGAGCTGACGGTGCTCCTGATCGAGAACAACCGGCGAAGCTGAGCTCCCACCGACCCGATCGAGGCCTACCGCAAGACCGCGGTAGGCC # Right flank : CGGGCGACGGGGGCGAGCCAGAGAGGCGCGCGCGGTCGCCCGGGTAAGGCGGCGACGCCCGGGGGGCTGGTGACGGCAGCGGAGTCACCCGGCCCGCAGGTCGCTTGGTACAAGAGCAGCAGGCCCCCGCCCGGGCTGCCCATCGTGACCGCCAACGGCAGGACACCCAGCCCGACTTCGGTCGTGTGGGTCCGGGAGTGCCTCGGCGGCCGAGAAGCGGATCAGCTCAGTCGTGGTGGGACCCAGGCGTGGTGCCGAAGGATCATGCGGGCTGCGGCGCGGGAGGGGGTCAGCCGCATCGCCGTGTTGCGCAGGGTGACTGCCAGTGGGTGGGCGAGCTGCTGGCCCATCCGCCCGGCCTGCCGCGCGGCCCGCGCGACGGCCTGGCTGCGCGGGCGGCGCTCGGCGTCGTACCGGGCGAGCGCGGCTTCGACGGTGGGCTCGGTGGCTAGCGCGGCGGCCAGGGTGACTGCGTCCTCCAGCGCCTGACAGGCGCCCTG # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGACTTTTGTCCGCGGACAAAAGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 50593-52154 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSBJ01000018.1 Streptomyces sp. A1136 NODE_18_length_165297_cov_143.708688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 50593 28 100.0 33 ............................ CCGTCCGCCGATCCCCGAGGCTCCGCCGAAGAA 50654 28 100.0 33 ............................ CTCGATGGGGTCGGACATGTGCTGCACTCCCTT 50715 28 100.0 32 ............................ GCCCACCACTGCTGGCACCGCGTCGAACCCGC 50775 28 100.0 33 ............................ CTGGACCGCGTGGGACCCGCCGCCCCGGCCGAC 50836 28 100.0 33 ............................ CGCCCACCACTGCTGGCACCGCGTCGAACCCGC 50897 28 100.0 33 ............................ CGTCGTTATGCGGAATGTCACCGTGCGCAAGAT 50958 28 89.3 33 ..G..G..............A....... CGCCTCGGCCGTGCAGATATCGCGCAGGATGTC 51019 28 100.0 33 ............................ GACGCCGGGGGTCGATCCGGTCGGATATCCGAC C [51033] 51081 26 89.3 33 ...-C.........-............. TGTCACCGGCACCCCGATGCAGGCGACCCGCGC 51140 28 92.9 33 C...T....................... CTGGACGCTGCCTGAGGTAATGCTCGCCGCTCC 51201 28 96.4 33 .....................G...... CAGCTTCCACATCGCGTCACTGGGAGAGCCGTC 51262 27 78.6 31 .C.......AG..C.......-C..... GACCAGGACATCGGTGGTGACACCGGTACCG G [51270] 51321 27 82.1 33 .CG.A.........T......-...... CGAATTCGGCGACGCATCCCAGGACTGGTGGAA G [51327] 51382 28 89.3 28 .G............T..........C.. CACCATCGTGGTGCCGGCGTGCCGGTCA 51438 27 89.3 34 .......T...A..-............. CTCCTCGTACGCGCGCTGCACGGCACGACGATGT 51499 28 96.4 34 ...C........................ CACCGGCGCGGCCCTGGCCGAGAAGTCCCAACAG G [51514] 51562 27 85.7 33 ...........C..-T.A.......... CCGCACGGCGAACGGGTCTTCCGGGACGTAGTG 51622 28 85.7 33 ........T.A.G.T............. CGTCATCGAGCGCGTACACAAACCCCCGCAGAA 51683 28 85.7 50 .........A.C..TT............ CTAGTTGGTTTTTCATCTACCGGTAGTAGTGTGGCCGACCTGCTCATGAA 51761 27 82.1 33 .CA..-A.......T............. CCGGCTCCGTGACGCTTACATGGAAACCCTCGC 51821 28 89.3 33 A..G.......A................ CGACCGTGACGTGCTCGGCTACTACATTTTCAA 51882 28 92.9 33 .......A......T............. CTTGCCGTCGGCGAGGAGGTCGCCAGCCGCCAT 51943 27 89.3 34 .....-........T.........G... CGCCTACGACGCCCGTAAGGGCGCTTCTGTACAG 52004 28 92.9 34 ........................C..T CTCCCGACTCCACACCACGATGGTGAAGCGCATC 52066 28 78.6 33 ...CCT...CA..............A.. TAACGTCGAAGACCCGGCCTGTGCCGATGCCTC 52127 28 75.0 0 ...A..T...GC....G...A.A..... | ========== ====== ====== ====== ============================ ================================================== ================== 26 28 90.8 34 GTCTGCCCCGCGCGCCCGGGGATCAGCC # Left flank : CCCCCGAGCCATCCACATCGCCGTCTGCACCCCAGACAGCGTCCTCCTCAACACCCTGATCAACCCCCGCCAGCAGATCGAGCCGGCAGCAACGCGTCTTCACCGCCACACCCGTTACACCCTGCGCAACGCCCCCGTCTTCGGCGACGTTTGCCCCCTCCTCGCCGACACCCTCCAAGGACGCCGCTGCGTCACCTACAACCTGCCCTTCACCCGACACGTGCTCCACCATGAGCTCACCCGCCTAAGCCGCCACCGACAGTTCGCCGCCGAATGGGCAGACGCCATGCCGGTCGTCGCCCACTGGACCGGCCTCTGGTCAGCCCGACACGGCACCTACCGCAACCAACGCCTCGACGGACCCCACGAAGCAAGATCAAAATGCGAAGCCCTCATTCACAAGCTGAACCAGCTGAGCACCACTGGATAGCAATGTCCCGGCCCTCCCACAAGTGTCCAAAAAGCAGGTAGCCGCCGTGCAACATCGCAGGTCGCCCAGG # Right flank : CCTTCCCCGATCCGTTCACGTTCGAGATCCAGACGTCCCGTCCCGCAAGCCGGGGACCCGAGCAGTCGTCCTGACCTACCTTCTCGCCGAGGACAGCAGTCGCCTCAGGACTGGAAATCGCACGAGTAGAGGCGCTGCGTTTACCAGCGGATGCGCGGGCCCGAGGACGGCAGCGAGGATGTCGCGCCAGAACGCCCTGACGGTCTGCTGTGCGTGGGTACGCGCGTCCACGTCCATGGTTTCGGCCGGGGAGGTGTCGGGCAGGTGTCTTCCTTCGACCGGCAGGTAGGCAACGCCGGCCGCTCGGAGGGCGCAGGTTCGGTGTTGGCCGTTCGTGAGGCTGTCGTGGTTGTCGTCCCAGCAGATGGGATCGTGTACCAGAGCCCGAGCCCATTCGCGGTCGGCTTCTTCGAGGTGCTCCATGGCGTAGGCCGCTCGGCCGCGCTCGGCGTCTTCGTCCAGCTCGGCAGCCGCGAGTTCGGTTGCGGCCTCGGCGATCG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGCCCGGGGATCAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //