Array 1 219870-221920 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCR01000003.1 Salmonella enterica subsp. enterica serovar Haifa strain BCW_2691 NODE_3_length_290417_cov_4.66484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 219870 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 219931 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 219992 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 220053 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 220114 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 220175 29 100.0 93 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGAGATCGGAAGAGGCGGGGATAAACCGGCAATTAATAACAGAAAATAAATAGCGAGGAA 220297 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 220358 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 220419 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 220480 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC AGATCCCAGC [220497] 220551 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 220612 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 220673 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 220734 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 220795 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 220856 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 220917 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 220978 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 221039 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 221100 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 221161 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 221222 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 221283 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 221344 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 221405 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 221466 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 221527 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 221588 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 221649 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 221710 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 221771 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 221832 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 221893 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 33 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238180-240330 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCR01000003.1 Salmonella enterica subsp. enterica serovar Haifa strain BCW_2691 NODE_3_length_290417_cov_4.66484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 238180 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 238242 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 238304 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 238365 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 238426 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 238487 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 238548 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 238609 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 238670 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 238731 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 238792 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 238853 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 238915 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 238976 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 239038 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 239099 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 239160 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 239221 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 239282 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 239343 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 239405 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 239507 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 239568 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 239630 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 239691 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 239752 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 239813 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 239874 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 239935 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 239996 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 240057 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 240118 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 240179 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 240240 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 240301 29 96.6 0 ............T................ | A [240328] ========== ====== ====== ====== ============================= ========================================================================= ================== 35 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //