Array 1 1301404-1306453 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066006.1 Delftia acidovorans strain FDAARGOS_997 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================================== ================== 1301404 32 100.0 33 ................................ CTCAAAGCTGGTCAGGTAGTCATCGGCGGTGCC 1301469 32 100.0 34 ................................ TCTGGAAGCTTGATCGCATCGCTCGGAGTCTTCA 1301535 32 100.0 34 ................................ ACCAGCGCTGATGCTGCTTGTGCGGCTGGCTTGC 1301601 32 100.0 35 ................................ CCTAACGCTGGATACTGGCGGAGGCTGTACCTTGC 1301668 32 100.0 34 ................................ CCCACACGTCCCCCCGCTATGACGATGTGACAAA 1301734 32 100.0 33 ................................ TCTTACGGGGAGGTAACTATTCCATATTCGCGC 1301799 32 100.0 35 ................................ AGCCGCATCTGTGGGCCGCTGAGCATCCTGTCCTC 1301866 32 100.0 34 ................................ TGCAGATGTGATGTCGTGCGAAGTGCCCGACACC 1301932 32 100.0 35 ................................ GTCGCGGCGGACCAGGAAGTCAGCCGGGTGCAGTA 1301999 32 100.0 34 ................................ CAGCACTATCGATGAGCTCGCAGAAATGTCGGGC 1302065 32 100.0 35 ................................ AAACCCAGGCTGCAGGATTTCCCGCATACATCCCC 1302132 32 100.0 33 ................................ AAGGCTGTGGCCGTGTATGAGTACCAGGCACGC 1302197 32 100.0 34 ................................ AGCGTGGACTTATTGCAGGCGCTGCTATGGCAGC 1302263 32 100.0 34 ................................ TTCCGCTTCGTCAGGCCGCTCAGTCACCATGCGA 1302329 32 100.0 34 ................................ CCTCAGAACTGGTCACAGGCAAGAACCTGGACAG 1302395 32 100.0 35 ................................ GACAAGAGCGCAAGAATGCTGCTTGGGAGCGCTTC 1302462 32 100.0 34 ................................ ATAGTTCACTTTGGAACAAGCATGGAAAACACAT 1302528 32 100.0 33 ................................ TACGCAGCCTTTATTGGCATCCTGGGGGCTGTA 1302593 32 100.0 35 ................................ TGCTGCGCCCGGGGCGGGTATGTCGTATGCGGCTC 1302660 32 100.0 36 ................................ GATCATGAACGCCGCCCAGGCGCGCAGGCGCCAATG 1302728 32 100.0 34 ................................ CAACTTTTTCGACCGCTCTGTCGATAGTTGTATT 1302794 32 100.0 33 ................................ GTCATATGCGGGAGCAGTCCATGGGCGATCCGA 1302859 32 100.0 35 ................................ TCGCCCGTGCGGCTGTAGTGCCACTTGCGCAGACC 1302926 32 100.0 37 ................................ TTTGCTGGGTCCAATGCGCCGCAAACTGAGCTACCGG 1302995 32 100.0 35 ................................ CATCAGAGGACCACCAGAGACAGGACGAAGGCCAT 1303062 32 100.0 33 ................................ AGCCAGCGTGGCCAGGCCGCTCCTGCCCTGCGG 1303127 32 100.0 33 ................................ GAGTTCAGAAGCACCGTCGAATAGATCAGCCTG 1303192 32 100.0 34 ................................ ATCAAGCGCATCGGCGGTAAAGCTTGATGATGGC 1303258 32 100.0 33 ................................ GACACCCTCCTGCAGTTCATTGAGAACTGCGGC 1303323 32 100.0 33 ................................ GCCGGGTTGCGTGCAGATGAAGTAGCCAGACAT 1303388 32 100.0 34 ................................ GCACGTCCTGGCTATCACGCCGACAGCGCCGAGG 1303454 32 100.0 36 ................................ GAGGCCGACTACCGCGGCGTGCTGCTGCGCGTGGAC 1303522 32 100.0 33 ................................ ACCAAGATGCAGGTCCGCTACGGGGCAACGTGG 1303587 32 100.0 35 ................................ ATCGTGCCGATGGTCCGGGTTGCCCGGGCCAATGT 1303654 32 100.0 34 ................................ GCCGATCTGGTCAAAGCAGCTACACCGCTTCGGC 1303720 32 100.0 34 ................................ TACGGTGCCCCAGGGCGATTATTGCGCTCGTAAT 1303786 32 100.0 34 ................................ CCTGCAGTGGTGCATGCTAATTTCTCACGCCCTG 1303852 32 100.0 34 ................................ ACGCCTGGACAGACGCGCGTTCTGCCCGCGCCCC 1303918 32 100.0 33 ................................ CACGATGACGCGGAAAAGCTGCAGCCCCTGGTC 1303983 32 100.0 33 ................................ GGCACAGACGTGGCGCCGCTGGCATCGCTCAAC 1304048 32 100.0 33 ................................ GATGACACGAAGTTGATCGAAGAGCTGGAGAAG 1304113 32 100.0 33 ................................ TCCTGCTGTAGCGCCGCGCGGCGAGTGCGTGTG 1304178 32 100.0 34 ................................ ATCATCCTGGCCGCCTGCGTGAGTAAGCAATGGG 1304244 32 100.0 35 ................................ CTCACGGATTGCGCAAGCCGCGCCGGAGCAGAAAC 1304311 32 100.0 34 ................................ TTCGATGCCATGTCTATTACAAGCGGCGGCATTG 1304377 32 100.0 34 ................................ CAGACGCTGCCCCCGTGGTAGCTCACGGGCTTGG 1304443 32 100.0 33 ................................ ATATGCGGTTTACCAAGGAAATCTATGTCTACC 1304508 32 100.0 33 ................................ GGGGCCCGCTGGACTGGAGCGCTGCGCTTCGCG 1304573 32 100.0 33 ................................ ACTCGGGGGCGCGGGCGTTACCTGAACAACAAT 1304638 32 100.0 35 ................................ ATCGCGGGGTCGTCGCTCGCATACCAGGAGAGAAG 1304705 32 100.0 34 ................................ TTCACGCGCAGCAGCACTGCGCCCCAGCCACCGG 1304771 32 100.0 34 ................................ CCCCACCGGTACCCCCGCCCGTGCCGCCCCCGTT 1304837 32 100.0 33 ................................ TGGAGCCAGCGCACGCAGCGCGTGGCCTCTGCT 1304902 32 100.0 34 ................................ GTACGAGTGGGCAATGGCATCGACAGATCTTCGC 1304968 32 100.0 34 ................................ GTACGAGTGGGCAATGGCATCGACAGATCTTCGC 1305034 32 100.0 33 ................................ GGCTGCCGAGCAGTTGCCCCTGTTTCGCTGCTC 1305099 32 96.9 34 .....A.......................... ATCTCGAACGAGGCGATTGCCACGCGCTCGCCCT 1305165 32 100.0 35 ................................ CTCGATGCTGAGCTGCACATCTCCCTGGTCGGCCA 1305232 32 100.0 33 ................................ ACGCAGGGGCCAACGCTGGACGCGGCCATTGCA 1305297 32 100.0 34 ................................ TATTTGTTCTTTGGTCACTTCGCCCAGGCGCATC 1305363 32 100.0 33 ................................ TTTTTTGGGTGGTTGGGTATTCCCCAATCCAGC 1305428 32 100.0 35 ................................ CAGCAACTCAAGTCCCAGCTCACAGCCAATCTGAG 1305495 32 100.0 33 ................................ TGTCGCCACGTACTACCTTGGCACACATTGCGC 1305560 32 100.0 34 ................................ TGCAGCACGTCCTTGACCTGCGACTCAACGAAGG 1305626 32 100.0 35 ................................ AAGCAACTGGAGGCGCCCCAGGCCAGCGAGAAGGT 1305693 32 100.0 36 ................................ GCTCCGCTGTTCGACTTCGACGGCATGGGCATCTAC 1305761 32 100.0 35 ................................ TTCGGCGTGGCCGTGCGCAAGGCCAACGAGCGCGT 1305828 32 100.0 33 ................................ AAGCGGCGCTCCAGACGCTCCACGTCTTTTTTC 1305893 32 100.0 35 ................................ CTGTCCGTGCCAACCTTTCTCATCGGCAGGCCAAG 1305960 32 100.0 35 ................................ TCTCCAGTCCAGAAATGCCAAACGCCAGCGCAAAG 1306027 32 100.0 33 ................................ CATTTCGCCCTCGATGCCCGCCAGCAGCACAAC 1306092 32 93.8 35 ...........C.....A.............. TCCCAGCGCATGGCCAAGCTCTCCGAGGTGCGCAG 1306159 32 100.0 34 ................................ GAGCGTTGCGCAGCGGGCCTCCAGCTCCATCAGG 1306225 32 96.9 33 .................T.............. GACGCACTGCTCAACTACGCGGGCTCCGTGCAC 1306290 32 93.8 100 ..........A.T................... GACCCTGGCACCGGTGCCTACCTCAACGACATCACCTTGTGCCCCATGCGGGCGTGGATTGAGACATCTCGCACCATCTGCACGAGGTCTATGAGATCTG 1306422 32 75.0 0 T.G.......A.A.....A.......G.T.T. | ========== ====== ====== ====== ================================ ==================================================================================================== ================== 76 32 99.4 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CAGGCGATGAAAAATGAGGTGCGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCTGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGTGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAGCCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGGGCGAGCGAATGGCTGAACGCCGATCCTGCGGCATGACAGTGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCC # Right flank : CCCCCGTTTGCACTGCAGCCTCGTGTGGTGAAGCATGGGGAACTTGGGAGTTTGTGGCGGTCATGCCCCATCCTCGAACGTCGCTCAACCCCCCTTCCAGGGGAAAACCCCCGGGCGCCCGCGCCGCAAATGCATAGGTCTGCGCATGAATCGTTCAGGCCCGGTGCCATCCCTGCGGAGAATTCATGAAAGGAGCCTGCAGGGCATCGCAACCACGGGGCTGCATGCACCCGCAATAACAAGAAGCACAAGAACAAGAAGCACAAGAAAAAGGGCTGGCGACCGGTTTCAAGCTGCTCCCATGGCAGCCGTGCTGCGGCCATGGGGATTTTCGCCAATCGGCAATGTCAAGGAGGAGAGGGATATGAATAAACGCATGATCCGCAGCGCTGGCCTGGCCGCGCTGGCGCTGGGCACGGCCCTGGCGGCCCAGGCCCAGAGTTCGGTCACGCTCTATGGGCGTGTGGTCGCGGGGGTGGACTACCAGAGCAATGTGTACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3387354-3387679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066006.1 Delftia acidovorans strain FDAARGOS_997 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3387354 28 85.7 31 TGG............A............ AAAGCGCATTCGCCGAGTGCGCTTCGTTTTT 3387413 28 100.0 32 ............................ TGTGCTCTACGACACGGCCGTGCATGCTGTCG 3387473 28 92.9 32 ...TG....................... CTCCTCCTTCGAGTGCTTAGCCCTGCACCCAA 3387533 28 92.9 32 A..........T................ TGTGATCTGTCGGCAGAAGCAAAAGGCAGGTG 3387593 28 92.9 32 ...........T.............C.. CTCTCCGCCAAGATGCAGGCCGCTTGAGCCCT 3387653 27 78.6 0 C............C.......-...GCC | ========== ====== ====== ====== ============================ ================================ ================== 6 28 90.5 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GCTGCACTGGTCTATTTCCTGCTTTTCATGGACCAGAGGTACATCAAGGCAGCGACCCAAAATTCCATTGAGGTGAGCATTCGTTCAGCCGACTATAAGCTGAAGCACGATGCTGGAATCTACCCTTCAGACGAGGAAGTAGAGCACCTCAACACATTCAATGCTTTTCAGCTGAAAAAGATGCGCAAGGAGTTTTGGTCCGCAGCGGCATGGACTCTGCTGATCATCGCCTTTTCCATCGGAGTGCTCGCCCTATTGTCGAAGGCCCCATGTGCCGGACTCACGGCGCCCAAAGTAGTTTCCTCAATCGGAGGAGCGTTGGCGGCATGGGGGACTATGTTCCAGTTGATCCGTGCGGATGCCACATTCAAAGCTGCGCAGGCACACGAATTGATGCGCCCGCCCCTCTTCCTGCTCCTGTTCGTGCCAGGCTCTGTGCTGGCTATCGCCGGCACGCTGGCGTAGGCCGGTGCCCGTCCGGGCGTGGAGTGGTACGCTCT # Right flank : CCGCCCAGCGGGCCTTTTTCTTGGGCGCAGCTCACACGGGCCGCGTCCGCACCTCAGCGCTCCAGGGCGTCTTGCCACCGTGCTGCTCGGCCTGCTGACGCTGCAGGTGCGCGGACAACCTGGAGACTCAGCGCTTGGCCTCGTCCTCCAGCGTGTATGCGTAGAACATGAGGTGCTCCAGCGCTACAGCGTGCGGGTCACGACCTTCCAAGGGCGATTCCCTGGCAGAGTCGTCCGGCAAGAAGACCAGAAGCACGTCGCCACAGGCTTCGTAGTCTGCGCTGAACTCAACGCCGTTGTGGGTGAAGACGCATTCGTGCATGCGGGGCATTGTCACAGGTGCGAGCTCGTGGCACCAGCGCCCAGAAACGACGAAGCCCGCACGGGGCGGGCTTGGTTGGAGTGCGGATTGCTACTTGGCAGGCTGTGTCGCAACAGTAGCAGGAGCCGCCGGCGGAGGCGGGTTCTTGGCCAGGTCGTACTGCATGAGGCCAATGATG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //