Array 1 186122-183651 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXD02000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0075 NODE_2_length_393444_cov_7.352207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186121 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 186060 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 185999 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 185938 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 185877 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 185816 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 185755 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 185694 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 185633 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 185572 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 185511 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 185450 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 185389 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 185328 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 185267 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 185206 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 185145 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 185084 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 185023 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 184962 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 184901 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 184840 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 184779 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 184718 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 184657 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 184596 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 184535 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 184473 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 184412 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 184351 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 184290 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 184229 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 184168 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 184107 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 184046 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 183985 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 183924 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 183863 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 183802 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 183741 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 183680 29 100.0 0 ............................. | A [183653] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 205726-202667 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXD02000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0075 NODE_2_length_393444_cov_7.352207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 205725 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 205664 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 205603 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 205542 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 205481 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 205420 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 205359 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 205298 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 205237 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 205176 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 205115 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 205054 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 204993 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 204932 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 204871 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 204810 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 204749 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 204688 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 204627 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 204566 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 204505 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 204444 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 204341 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 204280 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 204219 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 204158 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 204097 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 204036 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 203975 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 203914 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 203853 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 203792 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 203731 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 203670 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 203609 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 203548 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 203487 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 203426 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 203365 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 203304 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 203243 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 203182 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 203121 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 203060 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 202999 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 202938 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 202877 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 202816 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 202755 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 202694 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //