Array 1 149810-153071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVS010000024.1 Erwinia amylovora strain Ea2-95 Ea2-95_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 149810 29 100.0 32 ............................. CCATGCGCGATGAAATCCCATTTGGTTTTGAT 149871 29 100.0 32 ............................. ACGGCCGCAATTGGGATCAGCCCGTCGATGTA 149932 29 100.0 32 ............................. GCTGCTCCTCGCATCCGCAAGCTGCGCCTTCC 149993 29 100.0 32 ............................. GCGTTAACAAGGGCGCGTTCGCTGCGGTCATA 150054 29 100.0 32 ............................. ACAACCCAAAAATAAATTTCGGGAAATTATTT 150115 29 100.0 32 ............................. CATTGCCCGTCAGTTCCGGGAAGCTGTATCTG 150176 29 100.0 32 ............................. CGTTATGAGCACGTTCACCTCGGCGGCGGCGA 150237 29 100.0 32 ............................. TTCCGTACTATTGAAACGGAGCAGGTGCGCGG 150298 29 100.0 32 ............................. GGGTACAGGCAGCTTCAGGCAATGGGAGGGCC 150359 29 100.0 33 ............................. CGTATTTTCAGGGTATGTACTTTATATGCTTGA 150421 29 100.0 32 ............................. CCGGGATAGCGTCATTCTGTGCGTGGAACATC 150482 29 100.0 32 ............................. CAATTCCGTGTTCTTCAGCACAAGAGCTTAAT 150543 29 100.0 32 ............................. GCTCTGCGGCAATCAAAGCGATTGAATCAGGG 150604 29 100.0 32 ............................. GCCGCACATGGCGACCTGTTATTGTTTGCTGG 150665 29 100.0 32 ............................. AAAAAAAAGTTAAAACATATCATTTGCCACAA 150726 29 100.0 32 ............................. ATGATTATATTAATTGGAAAGAGAGTATTGGG 150787 29 100.0 31 ............................. CAATTGATGATGTTGTAATTCGCCTCGATGC 150847 29 100.0 32 ............................. CTCGACACTGATATTAAGCCAGTCGTTATGCA 150908 29 100.0 32 ............................. GGAGCGTGTGCTGAAATAAAACGATGGGTTTA 150969 29 100.0 32 ............................. CTCGTCAGCTGGGGTTTACGACAGAGGTTTGC 151030 29 100.0 32 ............................. CTTGTTATTACGGAATTCTTTCTCTAAATCTT 151091 29 100.0 32 ............................. GAGGTAGACAGCAGAATACAGGCGTAAAAAAA 151152 29 100.0 32 ............................. CTATTCAGAAATAACATACGAGGTTTCTATGA 151213 29 100.0 32 ............................. CAGGAACATTCAATTGACGCTGAAATGGCGGA 151274 29 100.0 32 ............................. CGGTCGATGCATACGGCACTGTGCCTACGTGG 151335 29 100.0 32 ............................. CGCTAAAGAGGGTGCTGCGACATTCCAGGCGC 151396 29 100.0 32 ............................. GTCTGGAGCTAGGCTTATCCGGGTCATTCACC 151457 29 100.0 32 ............................. CATATAAGAGCGGAAAAGCAGTGGTAGATGGT 151518 29 96.6 32 ...............A............. CCGTACCTGCGCCGGTAACGGTGGGTAACTTT 151579 29 100.0 32 ............................. AAATTTGATGATTTCCTGAAAGCGAAACTTTA 151640 29 100.0 32 ............................. ACGCAGTCGCAGCTGATTATGGGCGGCACGGC 151701 29 100.0 32 ............................. TTGGAACGTCTGAACGCCACGCGCACGCAGGA 151762 29 100.0 32 ............................. CCGCGCGATAAGCCATTTTCAGAGATTCAGAG 151823 29 100.0 32 ............................. TTTGGCGAATTCCTGATTTACCAATCCTGTCT 151884 29 100.0 32 ............................. GCAATAGAATTCTCCGGAGAATCGGACGATGG 151945 29 100.0 32 ............................. TAGTGCAAAAATAAATGCCTTCATATCCCCTT 152006 29 100.0 32 ............................. AGCTGATAATACTTCCTTAGCCGAATTAAAAA 152067 29 100.0 32 ............................. GGAGCTGAAAAGGCATCAGGAGACATGGGTGG 152128 29 100.0 32 ............................. TTAATACGGCGCATTTTATAGCTATTTCGCGC 152189 29 100.0 32 ............................. GAGAGGGACGAAAAAGAACTAAGCGCTTTAAT 152250 29 100.0 32 ............................. GTTCCCAGTGCGGTGCTTGAAGATGGAGAACT 152311 29 100.0 32 ............................. GGCAGATGCTAATTATATGGCATCCGTGGCCC 152372 29 100.0 32 ............................. AACGTGCAGAGCGTGAGGCTAAAGAGGCGATG 152433 29 100.0 32 ............................. CCAGCGGATGCAGTAAATAAGATGATTTCAAC 152494 29 100.0 32 ............................. TAAACACGGAGCTGACCCAGTCCACCCCGCTA 152555 29 100.0 32 ............................. TATCAGGGGAATATCTGGAGGCTCACGTTATT 152616 29 100.0 32 ............................. GGCAATGAACTACTGGGGAGTCGGTGGCAGAA 152677 29 100.0 32 ............................. GATCTCGACTGATTGCATACCCTGACGGCGGC 152738 29 100.0 32 ............................. GCGGCAGAGTTTCGCCGATATGCGCGATACAA 152799 29 100.0 32 ............................. CTCGCCCGAATTCTAAATCAGAAGGGGGATCC 152860 29 100.0 32 ............................. TACCATGAATACTTACAAGCAGGCGCAGAACT 152921 29 100.0 32 ............................. GTTCCCGGCGCTTCGCCACTCTGCCACCACTC 152982 29 100.0 32 ............................. AGCAGTACAACATGTTCGGCTCGGCAATTAAT 153043 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.9 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182849-185317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVS010000024.1 Erwinia amylovora strain Ea2-95 Ea2-95_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182849 29 100.0 32 ............................. AATAGCATATCGCCTCCCCATCCGGGAGCAGG 182910 29 100.0 32 ............................. TACGAAATCAGCGCCGTATTCCCTCACGGCCT 182971 29 100.0 32 ............................. AGTTTCTGACTAAAGGGTTTGAAGGTGCTCGC 183032 29 100.0 32 ............................. ATCATTTTTCATATCTCGCAATTTATAGGGAT 183093 29 100.0 32 ............................. TAGGGGTGACGGGAGATACGTATGCGCAGCGA 183154 29 100.0 32 ............................. TATTGACCTAGAGTTTGAGCAACGTAAGATTT 183215 29 100.0 32 ............................. TGAATCAGCATACTTATCAAAGAACGGCGTCT 183276 29 100.0 33 ............................. CAACTAATGACCTCGTTTATATGATATTCGGCC 183338 29 100.0 33 ............................. CCAGAAAATGAAAGGGCAGCAACGGCGCAGGAG 183400 29 100.0 32 ............................. TAGGTTAGGTGGGGGAGGGGGTTATACAATCA 183461 29 100.0 32 ............................. AATTAATGCGGATCGATTTTATTAGTTCATCT 183522 29 100.0 32 ............................. CTAATCCTGTTCGAAATTATCAACACACGGTA 183583 29 100.0 32 ............................. TGGTCATCGAGGATGGTTTATTACTCGCAAGA 183644 29 100.0 32 ............................. CTCGAGTCCGGCAAACTCCAGCAGTTCGCGGA 183705 29 100.0 32 ............................. TCATTACCCGCACAGCCAGATAGGGCAAAGAA 183766 29 100.0 32 ............................. CCATCGCCTGAAAAGTACGATGTTATCGATCA 183827 29 100.0 32 ............................. GATTCAATAAATGTTCGTATATTCCAAATCAA 183888 29 100.0 32 ............................. ATCGTCTGCTAGTTATCAGTGACAATCAAAAC 183949 29 100.0 32 ............................. GCAATAATACCCGGTAGGTGTGGGGTGATGGT 184010 29 100.0 32 ............................. TCTTTGATGAAATGCTCCGGGGGCATCTGCCC 184071 29 100.0 32 ............................. CATCTGAATTTAGTTACAGCATTCAAAATACG 184132 29 100.0 32 ............................. AAATGGCTAACGCTTTGCGTCAGTTTGGGCAA 184193 29 100.0 32 ............................. GCCGCCGACAACGCTGTTAAGGATGGTCGTAC 184254 29 100.0 32 ............................. GAGATAAACAGATTTGGTTTCTTGCTCTTTGG 184315 29 100.0 32 ............................. CCTGTGGCTGGCATTGCGGTCATACAATAACA 184376 29 100.0 32 ............................. CTGCATAGAGGCCACCCACCACGGCTCGGCAA 184437 29 100.0 32 ............................. TGAGCCGTGACGATGGAGAAACAGACGTTTTT 184498 29 100.0 32 ............................. GACGTTTCTGGAACCTGTTCCGCACAAAGACG 184559 29 100.0 32 ............................. GTGGGTGGGGCAGAGTTTGCGAGCATATCTCC 184620 29 100.0 32 ............................. GAACCTGCTTGCGGTCAAATACACGCTTCCAG 184681 29 100.0 32 ............................. CCGTGCGAATGCTGTAACGGCGAGGGATTCAT 184742 29 100.0 32 ............................. TCAAAAATCTCGAATTGCTCGGTAAACACGTT 184803 29 100.0 32 ............................. GGAGCTGGCAATGATGACGAATGAGGATAGAC 184864 29 100.0 32 ............................. GAAGGAGACGAGGAACAGGATTAGGTATACAT 184925 29 100.0 32 ............................. ATAAATTCAGGATAAAATATGAATGAAAAAAT 184986 29 100.0 32 ............................. TAGCAAGGGCTTATTACTCTCACAATCCACGA 185047 29 100.0 32 ............................. TCACCACTGGCCAGCGGATCCCGGGGACCGGT 185108 29 100.0 32 ............................. GTGCTGATGGAAACCATCGAGAAGGCCGGGGC 185169 29 96.6 32 ................A............ GATATTACGTGTACGCACAGCCGCTGGCCAGT 185230 29 100.0 31 ............................. CAGAGCGGGTCAGATTCAGGGATGTATGTCA 185290 28 79.3 0 ...........AC..-A....C......A | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATGCCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGTCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGTGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 194782-195169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVS010000024.1 Erwinia amylovora strain Ea2-95 Ea2-95_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 194782 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 194841 28 100.0 32 ............................ GGCTAAATGCCTGAATTCAACGTTCTACAAAA 194901 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 194961 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 195021 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 195081 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 195142 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCAGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : ATGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGAAAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //