Array 1 8177-8529 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ965687.1 Prevotella bivia strain GED7880 Scaffold268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 8177 47 100.0 30 ............................................... TTACTTTGAAATCTTATCACGTTAGTGCTT 8254 47 100.0 29 ............................................... TAAAACCGATGATAGCATTTTTCAGATCA 8330 47 100.0 30 ............................................... AAAAGCAGATACAACAGCTTACAAATATGC 8407 47 100.0 29 ............................................... AGATGACCAGATAAAGCTACTTCTTCGCT 8483 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 100.0 30 GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Left flank : CACCTTATGGAAAGATTGGAATAATGTGTATTACCGATAAACAATTTTCCAATATTCAACTCTTTTATGGTAAAAAACCACAAAAGACTTCCACACCTTACCAACAACTTGAACTTTTCTAGAATCAGAAAATCCTCCTTATCTCTATTGATGAGGAGGATTTTTGCCTATCTTTTTATTTTTCTAAGTATCTCTGTAAATAACCATTATCAAGCATATTACACTGATTAGGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACACACTTATAGCTTACAAGATCAAACTGAAGTTGTGTTTGATACCACAAAGATAGAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGATAGAAATTTTCAAGCAAATCACAACTGTTTAGAAGAATCATTGTCAGAAACAGAA # Right flank : CCTATTCAAATGAGCATCTTCCGCATATTATGTTGTGTTTGATACCACAAAGATAGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGATAGAAATTTTCAAGCAAATCACAACGAAACAAAGATATAAATAAACTTTGAATTGGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACCCTATTTCTTTAGACAAGAATAAAGAATTGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACACTGTACACGATATGACCAATGTGAGCCTTGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACGGCTATTGGATTGTAAGAAAATGGTAATTAGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 8752-9453 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ965687.1 Prevotella bivia strain GED7880 Scaffold268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ======================================================================= ================== 8752 47 100.0 29 ............................................... CCTATTTCTTTAGACAAGAATAAAGAATT 8828 47 100.0 30 ............................................... ACTGTACACGATATGACCAATGTGAGCCTT 8905 47 100.0 30 ............................................... GGCTATTGGATTGTAAGAAAATGGTAATTA 8982 47 100.0 30 ............................................... CCAGCGTATGGGGTTTTATCTTCTCCTATG 9059 47 68.1 71 ................................NNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 9177 47 70.2 30 NNNNNNNNNNNNNN................................. GTAACGGACGATCTTTGAAATGTTTTCATA 9254 47 100.0 30 ............................................... GCAAGGCAAATTTGACTCACTTGGCGAGAT 9331 47 100.0 29 ............................................... AGACTTATTAATCTCTTGTGTAATCTTAG 9407 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ======================================================================= ================== 9 47 93.1 35 GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Left flank : TTGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACTAAAACCGATGATAGCATTTTTCAGATCAGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACAAAAGCAGATACAACAGCTTACAAATATGCGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACAGATGACCAGATAAAGCTACTTCTTCGCTGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACCTATTCAAATGAGCATCTTCCGCATATTATGTTGTGTTTGATACCACAAAGATAGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGATAGAAATTTTCAAGCAAATCACAACGAAACAAAGATATAAATAAACTTTGAATTG # Right flank : CTGAGTCTTTGCAAGCAGCATCACAAAATACGTTGTGTTTGATACCACAAAGATAGAAATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATAGAAATTTTCAAGCAAATCACAACCCTATAATACACCACAGTGAAGTATATCAGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACCCGATTAAACCTAATTCCATAGCCCTATCGGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACGAGCCCTGATGAAAGGAGGAAACGCAATCGGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACACACTCATAGTCATTTTGCGCCCTTATACGGTTGTGTTTGATACCACAAAGATAGAAATTTTNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 10100-10459 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ965687.1 Prevotella bivia strain GED7880 Scaffold268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 10100 47 100.0 29 ............................................... CTTCTTTCAAGTACATAAAATGCACCTGA 10176 47 100.0 30 ............................................... CTAATAGCGACAGTATTATCAAAACCACCT 10253 47 100.0 30 ............................................... AACCTCCCCGTGCGCTTGAAATGCGATTTT 10330 47 97.9 30 .....A......................................... AGAATGCGGATACTAATCGTATGAATGCTA 10407 47 87.2 0 ....................................G.....TGTGA | A,C,T,GTA [10438,10440,10443,10446] ========== ====== ====== ====== =============================================== ============================== ================== 5 47 97.0 30 GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Left flank : NNNNNNNNNNNNNNNNNAAGATAGAAATTTTCAAGCAAATCACAACCCTATAATACACCACAGTGAAGTATATCAGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACCCGATTAAACCTAATTCCATAGCCCTATCGGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACGAGCCCTGATGAAAGGAGGAAACGCAATCGGTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACACACTCATAGTCATTTTGCGCCCTTATACGGTTGTGTTTGATACCACAAAGATAGAAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGATAGAAATTTTCAAGCAAATCACAACAAGCTGAAATGGCAAAACTGACAATGGAAA # Right flank : AGGAACTGCACCATAATCTCATTTATATATAAGTGTTCCCTTTTTAGCCAGCGTACTAATGCTTTTATTGTACACTCGTAACTTTTTGCAGTACCAACTCTGCCAGCCTTTATGTACTCATCAGTTATTTGCCTGCTAAACTCTATAAAATCAAGGTTAAATACAGAGTGTGTCCGCTCGTAATTGCTTATATACTCCACAACCTCTGCCACCCCCATACAACTTGCTTTTGCTGTTGGAATAGTTGCCGTTATCTCTTGGTACTTAGTTATCTCCTTTTTAAGCAAATCATTTACTTTGGCTGATTTTATTTTCAACCCTCGTGTCAGCTCCTCTTTGGTTACAAATATGTTTGTGGCAATGTGTCTGCGTTGCCTGTTGTGTGTAACACGTATCTTCACATTGTACGTGCCATCTGCTTTTTTATGGTGGGCATATACCACCGCCTTAAATGTTGTACTCATAATCTTGCAGGTAAACTGTGGCACATTTGAACCACA # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //