Array 1 2344011-2343368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028226.1 Lactiplantibacillus plantarum strain SRCM101187 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 2344010 28 100.0 33 ............................ TACGCTGTATTAGCCCCATTTAATCACCTACCA 2343949 28 100.0 34 ............................ TCACAACTTTGCTCATATTCGTGGCACCCGACTA 2343887 28 100.0 37 ............................ TAAACGATGACTTAGTTACTTATATCACGGACTGGAA 2343822 28 100.0 33 ............................ TATGGTATTTTTCTCTCATCTCATCGCTTCCAT 2343761 28 100.0 33 ............................ CCTAACGTGTGCTTGTGGCGGAATAGGTAGACG 2343700 28 100.0 33 ............................ CTGTGGGAATCTTACCGACAGGGAAATGCAATT 2343639 28 100.0 33 ............................ CGATAGTAATTGGTCCTCCGATATTGGTATGGG 2343578 28 100.0 33 ............................ TAGTTTCCAGATTACCAACAGTTTTTTGTACGT 2343517 28 100.0 33 ............................ TTTGGATATCAACCAGCTTGTTAGTTCAGCTTA 2343456 28 100.0 33 ............................ CGTGTCATTGTAGATAGGTGCTTCTGGCTCAAC 2343395 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ===================================== ================== 11 28 99.4 34 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : AAAACCGGCGCCCAATCGATCTTAAAAAACTAACCAAGAAACGCGGAATATTTGCTTGGAAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACAATATCTTAGAAACCATTGCGGGTTTGCTTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAGATTGTGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGCAAGGTAGTTATTGAAGGATGGAAATGAGTTGGCGTGTATTACGGCTCGCGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTATTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : AAGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGACTCGCCCATTTTAGCATCATTCCCCGCTAAAACTGCCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTGAAATTGGCATTTAAAACACCACTGGCTGATCAAATGCGCCCGCAATCACTGGAACAGATGGTCGGGCAACAGGATCTGTTGAAGGCAGGCCAGCCATTACGCCAGATTATTGATCAACATGTTAATATTCCCCTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGTCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTAAAACATTGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2348830-2348496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028226.1 Lactiplantibacillus plantarum strain SRCM101187 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2348829 29 100.0 32 ............................. CAACCGCCATTATCCAACCAATTCGCTAGCTG 2348768 29 100.0 32 ............................. AACATCAACATCGAAAGCCCATTGGGACTTGG 2348707 29 96.6 32 ............................T TGCGAAACAGCTAGTGCAGTTATTGCCGGGTA 2348646 29 100.0 32 ............................. ACGATCGACACTTCTAAGTATCCGAATGGTGG 2348585 29 89.7 32 ................T.......C...T TCTAAACCCGTCGATTTCGACTGGTTTAAAAA 2348524 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : TACTGGTAGTTATATACGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAACTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTTATGTGAGCAAGAATCGTTGAAACAATAAATAATCTGCGCTACGGATGAGATATGCCTGCTGCAAGCCTAGTACTTGGGCCCACCGCATAGTTATTAATCATAAATTTATCTCTTAGCATTTTGTATCACATAATTTATGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCTATACATTGAAGGCCGCCTTGCTTGTTTCGTCATATTAATAGTGTTCATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTACTGCTATAATAGGCTTTGTTTAGT # Right flank : AACAAAGCCATAGATAAAGCAACAAATCACTTTGAAACAAATACGACTTTACAGATATAGACGTGCACACTTTACACATCAGCACGCTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATGTGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCCTTCTATGTCATTTTCTATAAATGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTGTTACCAATAAAGGCCTTCATTTCACTCAACGCCATAGCTATCGAAACACCTTGCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2357132-2357470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028226.1 Lactiplantibacillus plantarum strain SRCM101187 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2357132 29 100.0 33 ............................. GACTGACATTGCGAAGTTGAGTGATCGCGATGG 2357194 29 100.0 32 ............................. GAGCCTACTGCTGCTAAAGATGCAGTCGCTGC 2357255 29 96.6 33 ............................A CGTGAATTTTGCCATTACATTTCATCCTCTCCA 2357317 29 100.0 33 ............................. ACGCTTAAAACTCAAGTTTTCAAGTATGTTTAG 2357379 29 96.6 32 ............................C GACTGTTCCAGCCTTGCCCGTGAAGCTAAGCG 2357440 29 96.6 0 .........G................... | GT [2357461] ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.3 33 GTGTTCCCCATGTATGCGGGGGTGATCCT # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCCGGGCTGGCTTTGAGTTGGTTGATCATCGTGAGACAACATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCCATGCTTCACCGAGCTAAAGGGCACGGCGTTCGCTTAAGTCGTGTGACATTTGAAGGACTCCTATGTGTCAAAGACCTACCAACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTGATGACGGTCATTCCTGAAGTACAGTGATTGACTTACATCGGTGTTTACTGGATTGGTGAGCCTGGAACCAATGCTGACGAACCAGGGATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGCTATCCTCGAAGTCAAGTTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGCGGCGGGATTTGTCAAGT # Right flank : TTGGCTTGAATGCAGCAGTGACCCGCACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGGATTAGCGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTGAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACACCGGCGAACATCTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAAGTGACGAGCGAAATCAGGAAGATCAGTGTTGAGACGAAGAAGAATAGGGACCAGATGATGCTCAGTGTTTGATCAGTGATAAAAGCCCATTGTTTCAAATACTTGCCTGGATGAGTGGCAACCCGTTTAAAGTTGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //