Array 1 504177-505669 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJV01000001.1 Salmonella sp. S123-66599 NODE_1_length_684370_cov_144.268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504177 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 504238 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 504299 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 504360 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 504421 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 504482 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 504543 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 504604 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 504665 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 504726 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 504787 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 504848 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 504909 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 504970 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 505031 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 505092 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 505154 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 505215 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 505276 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 505337 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 505398 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 505459 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 505520 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 505581 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 505642 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 521801-523704 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJV01000001.1 Salmonella sp. S123-66599 NODE_1_length_684370_cov_144.268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 521801 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 521862 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 521923 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 521984 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 522045 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 522106 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 522167 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 522229 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 522290 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 522351 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 522412 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 522473 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 522534 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 522595 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 522656 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 522717 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 522778 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 522839 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 522900 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 522961 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 523023 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 523126 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 523187 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 523248 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 523309 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 523370 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 523431 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 523492 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 523553 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 523614 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 523675 29 96.6 0 A............................ | A [523701] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //