Array 1 2419328-2413000 **** Predicted by CRISPRDetect 2.4 *** >NC_017857.3 Methylophaga nitratireducenticrescens, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2419327 28 100.0 32 ............................ ATTAAGCCCGTAGGCATTTCAATCCTAACCCA 2419267 28 100.0 32 ............................ TCACAAATCTTGGTAGCCGCCATAACCACAGC 2419207 28 100.0 32 ............................ TTTATCACTCTGCCCGTGTTCGGCCATAACTT 2419147 28 100.0 32 ............................ CATATCTTGTTTTGAGCGCGTCCATAGCTATC 2419087 28 100.0 32 ............................ TTTCCACCTTTCTAGTGGTGAGGCTGTGCGAT 2419027 28 100.0 32 ............................ ATATCCGGCATAGGCATTTGGGTCATAGTCGT 2418967 28 100.0 32 ............................ TTAGCTAGATCAATAGCGGTCGCGGTGGTTGA 2418907 28 100.0 32 ............................ AGTCTGACTTGATGAGGTCGCGACACTTACGG 2418847 28 100.0 32 ............................ AGACGGTCAAGAGGCGCCAGTCTCAATTGCTG 2418787 28 100.0 32 ............................ TGCCAGCCTTTATGGTTATCGGTGTACCAAGT 2418727 28 100.0 32 ............................ AGACTCAATGAATGGGGCTGCGTCATAGCCGC 2418667 28 100.0 32 ............................ ACCAGCAACAGTTAAACGGTTTTGATTAGAGT 2418607 28 100.0 32 ............................ CATCAGTGATAGTAGAATCAGGAATAACAGGT 2418547 28 100.0 32 ............................ ACCATGAAACCATTCGTTCACGCATTGACCAT 2418487 28 100.0 32 ............................ ATAAGAACACCTCATTTAATTAAGCGCCATGT 2418427 28 100.0 32 ............................ TTTCCTAAAACTTTTTCAGAGGTTCATCATGA 2418367 28 100.0 32 ............................ TTCTTCAGCTAAGCGTTTTAATCCCCGCAAGC 2418307 28 100.0 32 ............................ ATACCAGCAGCACGAGAAACAGAAAGCACAGG 2418247 28 100.0 32 ............................ CTGACCAAATCCCAAAACAGAGCAAAGAAAAC 2418187 28 100.0 32 ............................ TAAACCGCTGACTGATGATGTGATTGAAAGAC 2418127 28 100.0 32 ............................ ACGCCGATTGCCAATCCGCAGCGCACAGATAG 2418067 28 100.0 32 ............................ ATGAGTGAACGACTTTGGCTGTATGACCGGTT 2418007 28 100.0 32 ............................ TTGCTGGTGATGATTTTCCGGCAAGCGGTTTC 2417947 28 100.0 32 ............................ ACTGCTTAATACATCGCGCCAATTCATCCGAC 2417887 28 100.0 32 ............................ ATCAGTCAGCAAGCCGATGAAGGTGCTGCAAA 2417827 28 100.0 32 ............................ TGAGCGCGTTAAACCGCCCGCTGCAAGTTGGC 2417767 28 100.0 32 ............................ TTAACTTGTATTGGGTTATGTATTCATGTGCT 2417707 28 100.0 32 ............................ TTTATGGCGTAGAAGAACACAGCGAAAAATAT 2417647 28 100.0 32 ............................ TTAATGAAATGGCGTTTCAAAGAACGCTGGAA 2417587 28 100.0 32 ............................ AAAACAGGGCAAAGAAAACAGTCCGTCATAAA 2417527 28 100.0 32 ............................ TGCGCCTAATCGAATGTAAGTGCTTATTACCC 2417467 28 100.0 32 ............................ ACCGATTTCACTTACAGGATGGGCATCACTTG 2417407 28 100.0 32 ............................ AACCGTTGCCAGTTGAACGATGGGCATCAACA 2417347 28 100.0 32 ............................ AATAAAAGGCCAACGCATCCAGATCGGCTTGA 2417287 28 100.0 32 ............................ AGACATAATTAGGGACTTCAAGTTGAAATGAT 2417227 28 100.0 32 ............................ TATTAAAGGATTGCTGGTTGATGGGTTTGAAG 2417167 28 100.0 32 ............................ ATGTTGACCACTTCGACCGCTTCCGGCTCTGC 2417107 28 100.0 32 ............................ ATTCACCTCTTCCCCATGGGGTTCTTCTGAAA 2417047 28 100.0 32 ............................ AAAAAAAAGGGGGGGTCCGAAGACCCCCCTGT 2416987 28 100.0 32 ............................ GCTTCAGTTATTGCAGTATGGGGGGTTGCCTT 2416927 28 100.0 32 ............................ TTACTTGCTGCATCTTCAAGTATTATTGATAA 2416867 28 100.0 32 ............................ AAACTATAACGAAAGCACGCCCAAAGAGGCAC 2416807 28 100.0 32 ............................ TTTCCCCGCAATTTATCAAAGGTGAACTAATG 2416747 28 100.0 32 ............................ TGAACTATATCAGTCAGCAGACAGAAGGGTAC 2416687 28 100.0 32 ............................ TGAAAAGGTGGCCAGCGATGTTAAAGCAATTC 2416627 28 100.0 32 ............................ AGCCACTCTTGACGTCGAAACAGAAGCACGCC 2416567 28 100.0 32 ............................ AATGGCCTGTTACTGTTGAATGTGAAGTTTCT 2416507 28 100.0 32 ............................ ATCACCAGAACCCAAGTCAGAAATAAGTTCTA 2416447 28 100.0 32 ............................ TTCATCAGCTAAGCGTTTTAATCCGCGTAAGC 2416387 28 100.0 32 ............................ TGACTTGTATTTTGCTGCTGTTAGTTATCGTC 2416327 28 100.0 32 ............................ TAGTTCCAGCGTGGATAATGGAGCCGCCCCCG 2416267 28 100.0 32 ............................ TACACCGATGCCGAGGCCTCAACTGTTTCTGG 2416207 28 100.0 32 ............................ CTGATCGGAATAGCCGTGAGGGTGAGCTATAG 2416147 28 100.0 32 ............................ AGCATCAAGCAATAAAACGTCTGTCTCAGCTT 2416087 28 100.0 32 ............................ AGCATCAACATCAGCACGTAGCTGGTTGTTTT 2416027 28 100.0 32 ............................ AAATCTGGCCTTTTATCGCTGCCATTGTCATT 2415967 28 100.0 32 ............................ TGTAGCAAATTCTGGCTGCCCTGCTGCTGGAC 2415907 28 100.0 32 ............................ AGGCATGCTGTAAAGCATCTAAGAAGGTCATT 2415847 28 100.0 32 ............................ AGAAGCAATTCTTTATGTATATACATGGGGCA 2415787 28 100.0 32 ............................ ATAATAACACCTCATTTAATTAAGCACCATGT 2415727 28 100.0 32 ............................ AACCGCCTGGAATATTCGCCGGATGCGCGGCT 2415667 28 100.0 32 ............................ AAATCAGCGACTTGCCGAAAATGGGCGCGATT 2415607 28 100.0 32 ............................ GCCGGGAATACACTATTGGCTGCACCGGCTAC 2415547 28 100.0 32 ............................ AGTTCCGGCACCGAACGCACCTCACTTAAACG 2415487 28 100.0 32 ............................ ATAACTGTTGGTATTCAAAGAAATGCTTTTCA 2415427 28 100.0 32 ............................ TATGCATCCTGACAACCTAGAGGTGATCCTTC 2415367 28 100.0 32 ............................ GTTAGCTCATCACCCATCTCACGACTATCCAC 2415307 28 100.0 33 ............................ CAAGTCCAGTTGTGCTATCTGCTGAGGGTGGTT 2415246 28 100.0 32 ............................ TTGGATATGCCATGTTGCACCCTTGATAGCGC 2415186 28 100.0 32 ............................ AGTTGCGTTTTGGCTTTAGCTCGCCTTTACCA 2415126 28 100.0 32 ............................ ATTTATCATCCCCTCAAAAAATTGCTTTATCT 2415066 28 100.0 32 ............................ GAGCATTGTACTTTGCCGTCTGCAAAGATGAT 2415006 28 100.0 32 ............................ ATGCTCGATGCTTGTGGCGCGCTTATGTCGTT 2414946 28 100.0 32 ............................ TAAGCTATATCAGAATCCCGCTTTTCCACTGA 2414886 28 100.0 32 ............................ TATTCATTTAATTAACAGAAAAATTCCTGATA 2414826 28 100.0 32 ............................ AATCACCGTTTTTTTAATCACAGTTTTACTCG 2414766 28 100.0 32 ............................ TGACATTTTCAGGGGTGGCAGGGTCTCAGGTA 2414706 28 100.0 32 ............................ TGATAGTCGCTTCTGCGGTCTATCGCTTTTTG 2414646 28 100.0 32 ............................ AAATCAGCAACGCCTAAATGGTCGCTTTTAAA 2414586 28 100.0 32 ............................ ACTTGTGCCGTTTGCGGTTAGGGATTGCCATT 2414526 28 100.0 32 ............................ TGACTGCCATCTGACTCAAACGCAAAAACCTG 2414466 28 100.0 32 ............................ ATACAGAACGTCATTGATTGGCACAAAAACGG 2414406 28 100.0 32 ............................ TCACCACGTGTACCGTCGATAACCTTTCTGAT 2414346 28 100.0 32 ............................ CACGGCATGTAAGCTACGGTAGATGCTGGCTC 2414286 28 100.0 32 ............................ TTTTACATATGGTTTTATTAATTCACTCATCC 2414226 28 100.0 32 ............................ TGTGCGGTTAAAAACGCCTGACTGATTTCGGC 2414166 28 100.0 32 ............................ GTCAATGTATGCTGTTAAATGCAATAAACAAA 2414106 28 100.0 32 ............................ AGAAGATGTATTATCGTAAGAAGTTCCTGCCG 2414046 28 100.0 32 ............................ TGACTTGTATTTTGCTGCTGTTAGTTATCGTC 2413986 28 100.0 32 ............................ TAGTTCCAGCGTGGATAATGGAGCCGCCCCCG 2413926 28 100.0 32 ............................ TACACCGATGCCGAGGCCTCAACTGTTTCTGG 2413866 28 100.0 32 ............................ CTGATCGGAATAGCCGTGAGGGTGAGCTATAG 2413806 28 100.0 32 ............................ AGCATCAAGCAATAAAACGTCTGTCTCAGCTT 2413746 28 100.0 32 ............................ AGCATCAACATCAGCACGTAGCTGGTTGTTTT 2413686 28 100.0 32 ............................ AAATCTGGCCTTTTATCGCTGCCATTGTCATT 2413626 28 100.0 32 ............................ TGTAGCAAATTCTGGCTGCCCTGCTGCTGGAC 2413566 28 100.0 32 ............................ AGGCATGCTGTAAAGCATCTAAGAAGGTCATT 2413506 28 100.0 32 ............................ AGAAGCAATTCTTTATGTATATACATGGGGCA 2413446 28 100.0 32 ............................ ATAATAACACCTCATTTAATTAAGCACCATGT 2413386 28 100.0 32 ............................ AACCGCCTGGAATATTCGCCGGATGCGCGGCT 2413326 28 100.0 32 ............................ AAATCAGCGACTTGCCGAAAATGGGCGCGATT 2413266 28 100.0 32 ............................ GCCGGGAATACACTATTGGCTGCACCGGCTAC 2413206 28 100.0 32 ............................ AGTTCCGGCACCGAACGCACCTCACTTAAACA 2413146 28 100.0 32 ............................ ATCACATGCCCGTCAAAATACCACGCGACCAG 2413086 28 100.0 32 ............................ TGCTTTCTCGTAGCTCCGAGTTCAGGTAACTG 2413026 27 82.1 0 ...T.........T.......A.-...G | ========== ====== ====== ====== ============================ ================================= ================== 106 28 99.8 32 GTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : CTTTTGAAGCGTGGCAGTATCTCTGAAGATGAAATCCAACAATACAAAGCTAAAATGTTTGCCCGAGGGTTAGATAACCCATATTTAGAGTTGGTGAGCAGTTCAACCGGACAAAAGCATCGACGCTATATCGAATTCGGTGAACTTAAAGGTGAGGCTACGCACGGCCAGTTTGACTGCTTTGGGCTTTCGAAAAGTGCAACTGTTCCTTGGTTCTGAAAGTGATTCTAAGTAAGGAGAATGCCGAAAAGCAAACTGCAAATTTCTAAAGTCTTGGATTTAAAGTCATCGAATTCGATGGCTTTAAAATGGTGTCCGGCATCAGTGGACCGCTACAGTCAGATTCTAAATAGGTTTTATCAAAATTTAACCATTCTTTTTAGTTCTTTAAAAAAACATTTAATTATTAATAAGTTACATGTAATCGTTTTATCATTCATAAAACCTGAAGAATGAGAGTAAATGATTGTTGTAACTTATTTTTTTTGCGTTAAACTTCA # Right flank : TCATCATTAAAATAATGAGAAGCTTGTTGTTACAACTTTTAGGTATATGTAAGAGCAATATTCTGAAGCCCTCACTCCCGATGTGCCGGGCGGGCAGTGCGTTGATGCTTTTGGGGCACATCCCAGCATCTGACACCAAATTACATTTTAAACTGCCAGGCTAGTTGATGTCAGTATTCATGAGCAATCGATGTTGTGGATAGAAAATATGTATTTTTGGTGAGGGGCGGGGCGATAGAGCTAATTATTTAATCCCGTCGATTTCGACGGGTTTAAATCTGCATTGAGTTTGCTATTTAACTGATAGTGATTTATCAGCTAATGGGCTTTGGGTCTGTTTGGAGACAAAAAAGCCGGGAAGAATCCCGGCTTTTTGATTGCTTTGATACGGATTTACTTGATTGGCAAGAAATACAATTTTCCGGCTTTCATATCGGGCATCAGAATATGTTTGCCATCGGCTGATAAAGCAATATCAGCTGCGGCTTCATACTCGTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //