Array 1 33885-33261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWBM010000012.1 Lactobacillus helveticus strain OSUPECh-4A NODE_12_length_34038_cov_983.247902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 33884 30 100.0 36 .............................. TAGTATTTTAGAAAGAAGACTTATGTCAGTACCTAA 33818 30 100.0 37 .............................. TTGATCCGGCTTGCTAGGTCTCAAAAAATCGTTTTTA 33751 30 100.0 35 .............................. ACACAAGCAATTATTAACGTGCCAGCTTTAAACTT 33686 30 100.0 35 .............................. TTAATTCTTACTAACTTTAAACCTTACGCTTACTA 33621 30 100.0 36 .............................. ATCGTAAAAACTCATATCTTGCGCCACCTTTTCATT 33555 30 100.0 35 .............................. TAATTCAGGTGGTAACGGAATGCTTGAACCCATTG 33490 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 33424 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 33356 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 33290 29 80.0 0 .A......C..............A-...TT | T [33270] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 95.3 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : TTCAATCAGATCAGACTCTTTTCTATTGAATACTACAACTTGAGTCTAGTCCGATTGGACTTTTTTATTAACTAAAACGATTTAACTAGCACCACGCGTAACTTAATAGAAATGTAAAGATGCTAAGCGTGAAAATATTAGTAAGACACGGTA # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATGAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 11175-9828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWBM010000061.1 Lactobacillus helveticus strain OSUPECh-4A NODE_61_length_11350_cov_885.118070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11174 30 100.0 36 .............................. CAGCACAAATTAAATCTGCAAAGGCTCATGGTCTTA 11108 30 100.0 35 .............................. ATTAGTAGTGGCAGCTTTCCAGTTGTCATTCATTC 11043 30 100.0 35 .............................. GGTGAGAGTGCTGCTAACATCCAATCACTAAATGA 10978 30 100.0 36 .............................. TGATGCCATAAAAATTGACTATTTGTGCGGTAGCGA 10912 30 100.0 36 .............................. TACTTCTCAATCAGCTTTTCAGCATCTTTTTTATCT 10846 30 100.0 37 .............................. GCGATCACTGGACTAAGCACAAAACCACTTCAGTTGA 10779 30 100.0 35 .............................. ACTTCCGAAGTACCATTGCCACCAGCCACTGCATG 10714 30 100.0 36 .............................. AACGGCATAAACCATTGAGTCGACATTGTCATCGTG 10648 30 100.0 36 .............................. AAGCTCCATTAATGCTGACTTAATCCCCCATGCAGT 10582 30 100.0 37 .............................. TTATCGGCTTACTGGCTGGCGTAGATTTGATTCTGTG 10515 30 96.7 36 ...............C.............. TACTTTCACCCATTGTTTTAGCAACGGCAGAAATAC 10449 30 100.0 35 .............................. AAAAAAACTTACATGGAAGTAAGTCAATCAGGTAA 10384 30 100.0 36 .............................. AAGTGCCCCTGCGCGCTTATATGCACTCATGCTAGT 10318 30 100.0 35 .............................. TTTGCTCACAGCCAGGGCTATGCGATTGATTTTTC 10253 30 100.0 35 .............................. TCCGTCGAAGTATTTCATAGCATCGTCTTTCCAGA 10188 30 100.0 37 .............................. TCTCACCGTCAACCACAGCAGAAGTCGGGCCATTGTC 10121 30 100.0 37 .............................. GATCAGTAAACTTAATTCCGTCTAATCGATAGTAGAA 10054 30 100.0 35 .............................. CAGAAGTTGTTGTTGAAGACTTTTCATTTTTAGGT 9989 30 100.0 37 .............................. GAAGAAAGTTAAAGAAATATCGAAAAATGGTAAATCA 9922 30 100.0 35 .............................. CTTTTAGTAGTAACCACAGAAGTTAAATAATTAGA 9857 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.8 36 CTTTACATTTCTCTTAAGTTAAATAAAAAC # Left flank : TTATTACAACGCCGAGAACAATCGAGCGCGCAGTTTAACTGGCTTTCAAGCACGATTAGAAATTGCTATTCTGACTTGTAATCTAGCTTATTGTCTAGAACGATTTAACTAGCACCACGCGTATTAAGTTAAATAAAAACTCAAATCTAATTATTGATGATATTGAAAATAGAAG # Right flank : AGTTGCAACTACCAGTCCTACTGTATCAATAGATTCAACGGCCCTATCTGTCGACCTAACCAAAAACGCATCCAAAAATCACTAAAATCATTAGACAAATCGCACAAATATCATTGTACCGGCATTTTGCAAATCTGTCGATCTCCCAGGATTTTCTTCGTATCTTATATCGACAGATTCTTCTTTAGAATATATCCGACGTTAAATCAGTTAAATCCTGACCCATAAATTCTTTATCAAGCCAATCTTTATTTCTATTTTTGAATATAATCACTGAATCAACGTTCTGTCGAATCCATCTATCCAACTCATTCTTCAAGCTTTCAAGCTGGGACTTGGTTAGTTCACCTTCGAATACTGAATTTTGAACATGAGTTAAATACTTTTTACATATTTTGAAAACATGTCTACTTACTTTAGCACCTTGTTTATCCATTACGATATCGTAAACCAGAATCACATACATATCTATTACCATCCCATAACATAAGGCTCATAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTTCTCTTAAGTTAAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6159-6369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWBM010000048.1 Lactobacillus helveticus strain OSUPECh-4A NODE_48_length_14928_cov_925.227594, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6159 29 96.6 32 ............................C ATTAGGAGCTTTCCCGAATAGAAGATACGAAG 6220 29 100.0 32 ............................. TACTTAAAATTATGCACTACTGGAGGCATTTA 6281 29 100.0 32 ............................. TGTCTATTTTTTCTTTTTGCGCCTCCGTGGCT 6342 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CCTATCTGGGTTTACAAAATATATCCTCGTTATCCGATGTATAAAACAAAATATGTAAAAGCATATAAATTAAAGCCTGGAGACACACCCATAGTAAGACATCGTGGTGTTGACTGGGGTTGGACCGTTGGAAAGTCTTATCGTTATTGTATTTTAAAAGACAGCTTTTCTTGGTTTGATGGCTATTCAAAATATAAATGGGTTGACCAAGGCTTACTTGATGGCTCTATGAAAGATGAGCATTTTGCCTACAAATTCACTTGGAAACAGTATTGTCAATTAATTAAAGCCGGTATCTACACAACAGTACATCCAAAGAAATTATGGAACTCCAAAATTAAGAAGATGATTGAAAGATGGAAGCCTGAGACTGATAACAGCTAATAAAAAAGCCCGCCTACTCAAACTAGCAGACGGGTTGTATTTAACACATTAAAAGAACACAGGTTCACTAAAAAGGAGGTGAACACAATGCCAAAAAGAAAAAAATACCGCTATTA # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCACATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCAATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //