Array 1 174211-173434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000012.1 Calothrix sp. FACHB-168 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 174210 36 100.0 35 .................................... CTCATCTAAATGAGTTGCATGACCTAACTCATGAA 174139 36 100.0 36 .................................... TGGTATGTGCCTTCCACGCCGTATTTACGTGCAGCA 174067 36 100.0 35 .................................... TTCCAGCAAAACGAAATACTGAGCATCACCAGTAT 173996 36 100.0 40 .................................... TCAAGATCATACTTAGCGTTTACTAAACTTAGTCCAATAA 173920 36 100.0 42 .................................... TTAACGTCCTCGCCTCTAACCAGCTTTGCGATCGCACTAGCA 173842 36 97.2 37 ............C....................... GGCTTTACCATATCTACATTATCTTGACCATCGTTAA 173769 36 97.2 37 ............C....................... GACTTAAGCTTAATTATTTCACCAAGCTTAATTTTAA 173696 36 94.4 43 .........G..C....................... CTAACAATGTCGTAGATTTCAGGAATGTAAACAGACATTTTCA 173617 36 97.2 37 ............C....................... TCTACGCAACACGACAACCGCAACACAAATGTGAAGC 173544 36 97.2 39 ............C....................... ACACAAGCATCTGCATCAGTCATTGTGGTTACAAATGTA 173469 36 86.1 0 .........G..C.................TA...A | ========== ====== ====== ====== ==================================== =========================================== ================== 11 36 97.2 38 GTTACAGTTACCTTTACCCCGCAAGGGGATGGAAAC # Left flank : AAGTTAACCGAGAAGGAACCGAAGCAAGCTAGTTCTCTCCATGAGGGACAGGTGGTGAAGGTGAAAATTTCGGCTGTTAAGGATGATGGGACGATTAAAAGCGTGAAGTATGTAAGTTAACTCAGTATTGCTGCTTTAAGTTTTGTATAGGTAAGGCTTGACGAATATATGTCTGTGAATTATGTTGTTTACATTGCAAATTTTTAGTTAAGTCTTACGTGCTTTCTCTAGGCTTAATAGAGAACAGAACCTTGAAAATTGCATAAATATCTTGGTTGTTAGGGTAGATTTCCATACTACCCTGAAAGGAAAAAGCGGTTTTGCGGCCGATCCGTCAAATCGCTGAAACCCTAGTTTTTTCGTAGACCCTGCCGATTGCTTATTCTGTAAGGCTTTCAGGGATTTTTTCTGGTTATTTTTGGACGGGAGAAAAATAAAATGAGTACCCCGTCGCAAACCGCCTCTGGAAGCTATAGGTGATATGGGTTTCAAGGCTAGGG # Right flank : TTAGGTATGATATTTATTCAGATTGTTAGCCTATAAACTTAGGTTGAAAAAGAGCGATCGCATTTCCTTGAAATTTTCTAATTGATTGGTAGAAATAGGAATCTCTGAAGGAAAATAATCTGATTAAATTATGTGAGATTAATTTAATTAATGATTGTGTGTTGTGGATTGTCGTTCAGGGTGGGGAGACTCTGGCGGGGAGGGGCGGGGTCTCCCCCATTGGTGTCAACTTAACGTGAAACCCCCATTCCATCTAGCTCCCATGCTCTGCGTGGGAGCTTAGATTTATGAGGCTCTGCCTCAATTTATCAGAAGACGAGGCGGAGCCTCGCAATCCGCATTTCCAGCCTCTGGCTGGAAACGAGATAAATGGATGGTAGGGGCATGGCACTGCCATGCCCTCTAGAATATATTGATGTGCCGCAAAAGCTATTTAAATGGATATCACCTCGCATACCCGAAATATCGCCGTCACCCTAGAAGGGTGCGGCTAATTCTAC # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTTACCTTTACCCCGCAAGGGGATGGAAAC # Alternate repeat : GTTACAGTTACCCTTACCCCGCAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 67460-68002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000013.1 Calothrix sp. FACHB-168 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 67460 37 100.0 36 ..................................... CTTCTTCTTTGGTAAGTAAAGGATATCTACCAGCAG 67533 37 100.0 35 ..................................... TGTGAAAGAAGATGCTCTCAAACTTGCTGCATGGA 67605 37 100.0 37 ..................................... AAGAGCAGTAATGGGGAGCAGGCTTGAAATCTATTTT 67679 37 100.0 36 ..................................... TGTTTTTGCCTGATTTAAAGCTGCTGCACCTTGGAT 67752 37 100.0 34 ..................................... ATCTTGAAGTTGATACAGAAGATTTAAAAAAAGC 67823 37 100.0 36 ..................................... ATTTTCATCTTGCAGTTTAGGAGAGATGCCAAGGTT 67896 37 100.0 33 ..................................... ACATATTCAACGCTTAATCGTTGGGAAAATAAA 67966 37 78.4 0 ...A........A...A.TG........A...T...T | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 97.3 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : CTGTGAGTAAAGCCCAATCGGAAGTCATGCCCCAGGAATTTGCTAAATTGACAGTACCAGTACTGTTAGTTGCGGGGGAGTATGACAAGATTATTCCGGCTGCAATGGGGCGACAAGCTGCGGCGATGAATGATAAGGTTGAGTTTGCGATGATTCCCGATACAGCGCATTTCCCTATGTTAGAAGATGCGTCTACTTACCTGCGGCGTGTTGGGGAGTTTTTGCAAATTCCCATAGGAGTTGATTAAGGAAATGACGATTTTCTATGCTGAATGCGCGGATGGGTAGGTGTGGAAAATAGGATTTTGGCACACATAGCTGAAACTCCTTATCTGTAAGACTTTCACAGATTAATTACTTATCTATCGCCCGCGCACCTTACACAGCAAGGCTTTCAGCGATTTTTGGTTTGCTTGTTCTCTATTGCTTGTGTTATGATTTACTCGTCCGCGCACCAGAACCTTGAAAACCTCATATTGCTTAACTTTCAGGCTTCCGCA # Right flank : TTTATTAATTTCTTAATTCCTCAATTCCTTCACTTTTAAAACCTCATCTAACCAAGCTAAATTTTCTGGTGAAATCCCAGGTACAGGTTCTTGACTATAATCAATCACTAAATCATAATTACCTTCATCGTAGAGTTCACTAATTAAGGTTTGAATATCTACTAAAGGTTCTGTATCACCTTCACGTAAAGGTAACAGAAAAGAAGGTATAGGATTTGGTAAATTAAATGGATATAAATCGGCTTTAGGACGTTTGGTGGCACTACTTACCAAGATTCTATAGTCAGTTTGCAAATTATTTTGTAGTTGCTGTATTGGCTTTCCATCTCGCAGCAAATCAATTTCTACTAAATTGGTATAACTTCCTAAAACTTGTAACCGCTTTTTTGTATATGCATTTCGTCCTTCACCTGGACGTTTGTTTTTTGGCGAGAGAATTTCAATTATAGTTACGACTTCTTGCGTAGCTACATCTCTCACTTCTAAGTAAGTCTCTTTGA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 111107-111440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000029.1 Calothrix sp. FACHB-168 contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 111107 37 97.3 37 A.................................... TTGGTTTTGAATTGCCATATAAAACTCCTACCAGCTT 111181 37 100.0 37 ..................................... TACTAGATGGGCTTAAAAAGCTGTCAGAAACATAAGC 111255 37 100.0 38 ..................................... ACAAAAATATGATGATGGGGTATTTTTGAATCAATGCC 111330 37 100.0 37 ..................................... TTAGCCATGTCGTCTCTTCTCCTGGGCTTTTGATAGC 111404 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 99.5 38 CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Left flank : GCTAATTATAGCTTTATAGTTAGCTGCTGTTTGCGGGTGTAATTCAGTGGTAGAATGTCACCTTCCCAAGGTGAACGTCGTGGGTTCGAGTCCCATCGCCCGCTTTTGATGCAAATTGTACATTAACTAATTATTTGTCACTGTTAACAGATTAATGTCATTTTTAACAAATTAGCGTCACTGTTAACAAATTAATGTCCTCTTCAACAACTCACTTCCTTTTATTCTATGCTGAACCTGAATTTATCAATGCAAATTTGGACTCAGTCACTGCAAGAATAAAAATTGGGAAGGTGACATTCCTTTCAACCCACCTCTTTATTTTGAACTTTACGCCTGATGTGAATTAGAAACGCCTCTGATCCCATCAGGGTTTCAAGATTCCTTCAAAATCATTGTTTAGGAACTACCTACGAAATTTCAAGGGTTTCAAGGCTTAATTCACATTTAAGGTAATTTGTAATTTTACATAAAAAATGCTACTGGACTATCGTGTGGAT # Right flank : TCTAGCTCTAGGGCGTGTCATCAATTGAGCCAAATGACAGAAGCAGCCAGATAAATTGCACCTAGAAAGTTTGTAGCACGTTTGTCGTAGCGTGTTGCGATCGCTCGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 52901-53872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000030.1 Calothrix sp. FACHB-168 contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 52901 36 100.0 37 .................................... GTTGAACATGATGCATAGAATTTTCTGGTCATGCTCA 52974 36 100.0 31 .................................... AGTTGGTTATTAACAACTATCTCAGAAATTC 53041 36 100.0 32 .................................... AGAAACAGTACCTCCAAGTGAAACTCCGTTTC 53109 36 100.0 38 .................................... GCAGTAGCGATTTGCTCTTGCTGCTGCTTTTGTTGAGC 53183 36 100.0 36 .................................... TCAATGCAACAAGAAATCGCATTATCACACCACACC 53255 36 100.0 38 .................................... TTTGAAGTTTGTCCATTATATACATTACGGACAAACAA 53329 36 100.0 37 .................................... AGCAAGGTTTCTTTGGGTCGCTGTTTCAGAGACTACA 53402 36 100.0 35 .................................... TTTGAGAGTACTGATTAAGAGAATGGTTCAATTGG 53473 36 100.0 37 .................................... GCAAGAGGGCATTAAAAACCCGATACTGAATTACTGG 53546 36 100.0 35 .................................... GAAACGGAACGGACTTGCGCGATCACTTCGTTAGA 53617 36 100.0 35 .................................... AATGAGCTAGATATAATCCAGCTACCGGACGTAAA 53688 36 100.0 34 .................................... TCGCTACCCGGACGTTTAGCCAGAACAAACTGAC 53758 36 97.2 39 ....C............................... ATGAACCTACACCAATAATAGAGAGAGCGATTTAAATTC 53833 36 77.8 0 ....C..A.......A...G.A.....T....T..T | AT,TC [53859,53864] ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 98.2 36 CTTTACACTTACCTCGCCCCGCAAGGGGATGGAAAC # Left flank : ACTACAAAATCGTTAAAGCCTAGCGTATAAGAAAAGCGATCGCATTACATAACTCGGTTCCTAATAAAGAGACATCCAATTTTTTAAATACCCAAATAAATTTGTAGCGCGAGCATCTTGCTCGCTGGTGTTCAAAAGCGAGCAAGATGCTCGCACTAAGAAATATGGGTAATTTATTTTTTGTAAGTCCCGAAATCTGACTGCGATGCTTAAATTTAATAGAAATTACCCGTTACTTGTAACAAATCAGTAACAAATTTGACTTAATTAGCTTAAAAATTCTATATTAAAAATAGTTTGTGTCGCTCATCGACACCACTCACCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTGCACAGCCAAGTTTCCAGGCTGTGAAATGCATTAATTATTGATAATTTCTCTGGCTTATTGACATTAAAAAAAGTGGTGTCGATTGGTGGGTCTAAAACTCTCTCCGCGCAAGGCTTCCAGAAGTGAACT # Right flank : TTGATCGATAAGACTCCTGGCTGATCCCGAAATCCCGCCGTCACCCTAGAAGGGTGCGGCTAATCGAACAAAGCCCACCTTTGTGGGCTAAAAAATTCAGTCCACGTAGGTGGGCTTGGTAGCTGTAGCCCCAGGCTTCTAGCCTGCGGGCGTTATTTCGGGTAAGCTTTTATTTCTAACTCCCCAAGAGCGATCGCATTTGATAAATTGAGTATCTACTTTAAAGCAAAAAGAGCGATCGCATTCTTCCCCCTCTGCTCCCTGCCCCCTGCCCCCTGCCCCCCTGCTTTCATCCCAAGCTCAGTCTAAAGAAAGATCCTGGTTTGGTGGAATTCGGATTAAATAGAAAAAACCGTGTACGCCTACGGGTAAAGGGAAATGAAGCGCGACTCTACTGGTAAGTTTGTCAGGAATTGGGAATTAGAAAGCAAACAACGGGTTAGTGTCACGCTTACCAGTACAGCATGGCGATCGCTCGATGCAGCAGCACAAAAGCAAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACACTTACCTCGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 60311-60625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000030.1 Calothrix sp. FACHB-168 contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 60311 36 100.0 34 .................................... GTGATGTTAATAACTAGACACTTCCATAAATTTC 60381 36 97.2 38 .....................A.............. ATTGCACCTTGAACACGCACGCCATTTTTCTGCATTTC 60455 36 100.0 36 .................................... GAGAATGTCTCTATGGTCTCCAGAATGGGCATGATG 60527 36 100.0 25 .................................... GAAAGGGAGGAGGGCACGGCAATGC 60588 36 80.6 0 .GA.G.C.C.........G.............G... | TT [60598] ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 95.6 34 CTTTACACTTACCTCGCCCCGCAAGGGGATGGAAAC # Left flank : CCAAACTACAACTGAAAGCCTAGCGTATAAGAAAAGCGATCGCATTACATAACTCGTTTCCTGATGAAGAGACATCCAATTTTTTAAATACCCAAATAAATTTGTAGTGCGAGCATCTTGCTCGCTTTTGAACACCGGCGAGCAAGATGCTCGCACTACGAAATATGGGTAATTTATTTTTTGTAAGTCCCAAAATCTGATTGCGATGCTTAAATTTAACAGAAATCACCCGTTACTTGTAACAAATCAGTCACAAATTTGACTTAATTAGCTCAAAAATTCTATATTAAAAATAGTTTGTGTCGCTCATCGACACCACTCACCAGAACCTTGAAAATCGCATAATTTCGTTAACTGGTGTCGATTGCTTGCACAGCCAAGTTTCCAGGCTGTGAAATGCCTAAATTATTGATAATTTCTCTGGCTTATTGACATTTTAAAAAGTGGTGTAGATTAGGGGGTCTCAAACTCTCTCCCCGCAAGGCTTCCAGAATTGAACT # Right flank : CAAAAAAGAACCCCGTGAAGGGATGAAAGATAATTGAAAATTAGAGCGATCGCACCAAAGCCGGTTTATTGTTGAAGTGTTGACTTTTAAACATATCGCAAAAGTCTAACAATAAGCTACCATATCCCCTAATTCCTGTTGGGTCTTTATGTGGGGAGTCGTACAAGTTCAGTATGAGTACAATCGAAGATATCAAAACTCAAAGCGCCAGTCATCTACAAGCGATCGCAGCACAATTTACACTTAAAGGTAAAGTTAGAGATATTCAAGCTTTTGGCAGTGGTAATATTAATGACACTTTTTTAGTTACCTTAGATGGGGAAACTGAACAAAATTTTGTGTTGCAACGCATTAATACACAAGTATTTCGTCAGCCAGAATTGATTATGCATAACATGTGTACTTTCACTGAGCATATTCGCCAACGGCTACAAAAGCAACCACTCAACCGACGCTGGGAAGTACCGCGAGTACTTTTTACCCAAGGTGGAAAAGATAAT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACACTTACCTCGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 83507-82591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000030.1 Calothrix sp. FACHB-168 contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 83506 37 100.0 35 ..................................... AAGCCTTGCAGGTGTAGAGTTGCGGCAATTGCCGT 83434 37 100.0 37 ..................................... ATTTCACCCAGCAATGCAGTTGTGATGGAAGCACACC 83360 37 100.0 38 ..................................... GTAATTGATTGTATCTAAAACGGTTTGTCCCAACTCTT 83285 37 100.0 36 ..................................... AATTTTGAGTCGCTGCTCTCTGCTTTTACGCTCATA 83212 37 100.0 34 ..................................... TCCCATTATCCTTACGAAATTCACACGTACTAGA 83141 37 100.0 38 ..................................... TCAAATAAATTTAGACTAGTGATTCTAAAACCTTGCTG 83066 37 97.3 36 ................................A.... AATTCTGACTGGTTTTCACTACCATCATTATTATCT 82993 37 100.0 35 ..................................... TTACAGGGTTATCTAGATATTGAGATGATTGTGCA 82921 37 100.0 35 ..................................... AAGTTATTGCTTGGGGCTTGTCCTGCAACGATTAC 82849 37 100.0 36 ..................................... GTTTCTGTTGCTCGATCATTTGGCGTTGGTGTTGCG 82776 37 97.3 36 ..........C.......................... TTGACTTTATGGATAAAATTTCACTTATATATTTAC 82703 37 97.3 40 ..........C.......................... GCAACTTCGGCAGGTGTCATGCCTGATTTTTTCCACATCG 82626 36 94.6 0 ...............................-....A | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 99.0 36 GTTTCAAATATCTATTACCCCGCAAGGGGATTGAAAC # Left flank : GCTGCTCGCACTACGGAATATGGGTAATTTATTTTTTGTAAGTCCCTTAGTTAATACCAATTGGCTGTCATTTATCATTTGTCATTTGTCATTGGTAAAGATTTTGTAACATACAGCATATTTGCAGGTAAATGAGGTACGCGCTTTGGGGCATGGCAGTGCCAATGCCCCTACAATCAATGATTATCTGGACTTCTCCAACTGGCAATCTGCTGTATTTTCTGTAAATTTCCTAATGCTTCTGAAATTTCGGTAGTATATTTGATATCATCCTAATTATTGATGTGTTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCAAAAACCTGGGGGGTTCTGCCAAAAACGCCAGAACCTTGACAAATTAATAAGTTCAGCCTTTGGAGATTTGGCACAGTTGCAAATTGATTGCAATAAGGTTGTCTGAAAATAACCATTTTTTTCGATCTGCCAAAACCTCTCACAAGATGGTTGCTGTGTATGGGTTTCAGCACTAAGCA # Right flank : TCAGCCGCTTACGACGTATATTTTTTACTTTCTTAAATGCTAAACAACGAACTTAACTTTAAATCTCTTCCCTTCTGTTATTTGCTTTTATGCAAAAAATATCCTGAAAAAAGGAAGCACCTGATAACTGTGGAGTTCTGGAAGGAATTAAATCGTTAAATTAAGCAGATTCAAACACGCCAGGTGGAATTGGTACGAGTTGAGGAGACGACAAGCAAGTTCCTTGACGATACCATATTCCTTCAGTCTCGAAGATCTCAAATTGAGTGGTCAAAATTGCCCATGCTTGTTCATTGAGACCGGCTGAATAAGTCCAAGTAAATTGTTGATGACTTTGTAATCGCTTTTCCAACTCGTGTAAATCTTCTGGTAGCCAGAATTTAGACATTGACCGTTGAGTCGCAATCTCAGCAGGAGTTTGCAACATTTCAATCATTGGCTGATTGACAATGATTTGCTGGCGGGTGTCTTGTCTGACAATGCTGACAGGAAGTTCATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATATCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 21784-23945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000037.1 Calothrix sp. FACHB-168 contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 21784 37 100.0 37 ..................................... TAGCCCGCATATAGTCATCTACGGGCATCCCAATTAA 21858 37 100.0 37 ..................................... ATTTCTGGCATTGTGATTGGGTCAAGGCTGGCAATTC 21932 37 100.0 36 ..................................... GATGATATGCTTTATGTTTGTATATCATCCACTAGC 22005 37 100.0 36 ..................................... TTCGTGAGGGAATGACAAGCACTGGTGTAGAACAAG 22078 37 100.0 35 ..................................... CAGCGTTATTAATTCAGGTATTTTTGCTCAAGAAT 22150 37 100.0 35 ..................................... ATTGAATAAATTGAAAGCCGCCGCCGCCGCCGCTT 22222 37 100.0 39 ..................................... TTGCAAAGACAAATTGGCGCAGCCGAAGACCAACTCAAA 22298 37 100.0 40 ..................................... CTTGTTTCATATTTAAGTGGTTGAATTTTTGCGCCCCGAA 22375 37 100.0 35 ..................................... CTGATTTATTTAATTTTGCGGCAACACAGGACTGG 22447 37 100.0 35 ..................................... ATTAGCGACAACGTCATACATTTCGCAGGCGCTAG 22519 37 100.0 36 ..................................... CTTCATCCAGATCTAAGGAGTACTGGGCTTCCCAGT 22592 37 100.0 36 ..................................... CTATTTTTAATTGTCCTAATCCTTATCCTTCTGGGG 22665 37 100.0 35 ..................................... TCCGCGATCGCGTTAATGCACCAGAAAATTTTACA 22737 37 100.0 35 ..................................... GACTACAATTTTCAAAAACTACTAAAATGCTTGAA 22809 37 100.0 38 ..................................... TTACGCCATTATCACAACAGATTAAAGACCAAGCGACT 22884 37 100.0 36 ..................................... GACTGCACACATTCAGAAAAAGTTTCAAAGTTTAAC 22957 37 100.0 35 ..................................... CTAATGATTCCACTAGTTGTGGCAGATTCATGGAA 23029 37 100.0 38 ..................................... GATACTAGTAGACATAGAGGGCAAACAAAAAGCGATCG 23104 37 100.0 37 ..................................... TGAGTAGATTTCCTAACACTACTAGATTATGGAATAA 23178 37 100.0 37 ..................................... TTTCTATCTTGAGCGATATGTTTTGATAGCCCTTGTG 23252 37 100.0 36 ..................................... AACCAATCGGCAGTGAAGTTGGCGCGACCACTGCGA 23325 37 100.0 35 ..................................... GCTAAACGGCTAAGACGGTTTAGAGCGGGTACGTA 23397 37 100.0 35 ..................................... ACTTTACCTGATTACGACGGCAGCGATCTGATTCG 23469 37 100.0 36 ..................................... AGTTTTTATCGCGCTTCGCTCTTTCTTCTGCATTGG 23542 37 100.0 37 ..................................... GTCAAAGGATTCGGGCATCAACCGAGACATTACCACT 23616 37 100.0 35 ..................................... ATGAAGCGGAAAGATATTTCACTGGAACTAGCCAA 23688 37 100.0 36 ..................................... TCCTCTAAGAATTTTTTCTTGTCCTGTTCTAACTCA 23761 37 100.0 37 ..................................... AAAACAGAAGTTTAGCACTTAATCGGAGGTTATTCTC 23835 37 100.0 37 ..................................... TCGCAGCAGAAAAAACTCAAACATCCGATTTATCAGA 23909 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ======================================== ================== 30 37 99.9 36 CTTGAAATGCAGCGAATCCCGGCAACGGGATTGAAAC # Left flank : CTTAAAGAGTTGGATTTGAATGAGTTTTTTACTATTGATGAGGTGGAATTTTTACAGCTTTATTCTTTGGTTGTACGTGCTTTGCGGTTGTGTGACCAAAGGTCTGTACAATTTTAGGTGAGGGGCATGGGGCATTGGGCATTGGGCATTGGGCATTAGGCATTGGGCATGGGGCATTGGGCATTGGGCATTGGGCATGGCGGTGCCAATGCCCCTACTAACTTGCAATTCGCTGTATTTTCTCCAAAGGTCTGGACATTGTTGGAGAATACCCGTATGATGATGCTATTAAATTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTTGACAAGTTAATAGTTACAGCGTTTGGAGAATTGCGACAAATAGGAATTTGTTGCAATAAGCGAGGCTGAAATGAGGTCATTTTTGAGGTCTGCCAAATTTGCTTGTGGAATCCTTGCTCTGTAAGGGTTTCAGGCGGCGGT # Right flank : CCAAATATTAAGCAACGCCAAAGCTTGTGTATTGACGCATATAGGGAGCTTGGAAACCAAGAATAATCTCTTGTTTAGGAATTCCCATTGCAACCAATTCCTGAGCGATTTGTATTTCGGTACTATTGTGTTGCACCCAAATTTTGCCATCGATTATGTCTAGATGTAAAACACAGCCATGTACGCGGCGATGTCCAACCCAACCGACACTCATAATTTGATAGCGATCGCGTTCTGTATCAAATATAAGTTGGCAATCAACTTCGCCATTAGCAATCGGAACGCTAGCATACTCAGTCAAAATTTTTTTAATTGCTACTCTATATTGATCTAATTTATCCATTGAGTAATCACCTCGTCGATTGGATCGTAGACAATGCGCTTAATTTGATAGCGTTCTAATGATAGTTGATTTGAACCTAGCTTTTTGCGATAAACCGGGAGCATCCCAAATGTGCAAAAACGCCCTCACCCTATAAGGGTGGGGCTAGAAATGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGCAGCGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 2 30958-32984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000037.1 Calothrix sp. FACHB-168 contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 30958 37 91.9 38 A..C..C.............................. ATTTCACAATCAGTTACTACAGTCCCATCTTGGGCGAT 31033 37 100.0 38 ..................................... GTTAATAAATTTGGATCGCTTGCTTCAATAATCCCTTC 31108 37 100.0 35 ..................................... TTACTTTCTGCTTCTTGTGCCTTTAAAACATCCGG 31180 37 100.0 36 ..................................... TATTTGGGGATGGAGCGTATTGCTTTGAAAATATTA 31253 37 100.0 34 ..................................... AGATAATTGAAATCCATACAACCTTGTCACCATG 31324 37 100.0 37 ..................................... AATTTTGCGGCGATACTACAAGCCAGCCTTTACCCTT 31398 37 100.0 40 ..................................... CTTAAAAAGCCTTGAGGCAGCAAATTAGGGTATACACCCG 31475 37 100.0 38 ..................................... AATTAGAAATTGGTAATTAACTGAGGTCAAATTATGAA 31550 37 100.0 37 ..................................... ACAGTTGATCCTAAGAATGAAGAACAGCTAACCGAGG 31624 37 100.0 35 ..................................... CAGAGAAGCCAGTGCTGATTTATTTAATTTTGCGG 31696 37 100.0 36 ..................................... ACAAAATAACCTAAAGCGCATAGCCGGGTCGATCCC 31769 37 100.0 37 ..................................... ACATTTTATCCCTTTGGCTTGTAACGGTCAATACCTC 31843 37 100.0 38 ..................................... CTTGCTGCCACTGGGCGACATATATCGCCCTTGTTCTG 31918 37 100.0 35 ..................................... ACACAAAGAGAAATACCACAAGAGGCCTCTGCCTG 31990 37 100.0 35 ..................................... GATAAAGATTTATCAAGATTACAAGCTTTGCACGA 32062 37 100.0 35 ..................................... TTTTAGCGCTGGCTTTGATGAAATTGGGTTTTACC 32134 37 100.0 36 ..................................... CAGTTACTTGATACAACCTTAACTAGAACTGTTTGG 32207 37 100.0 41 ..................................... TATACATGGTTGGAGAAATGAAGACTTGGAGGAATGTCCAA 32285 37 100.0 37 ..................................... ACACTCGATACTACATCAAAAACCATCGCCCCCGATT 32359 37 100.0 36 ..................................... ATTTAGAAAGGGGGTCTCTAAAACAGGAACCGCCAT 32432 37 100.0 37 ..................................... TACCCATGACGCAAATCATCGAAGCAAGCGCCACTGT 32506 37 100.0 37 ..................................... TAATTTTGGGGCGTGTGTTCCGCTATCTTTATTAATC 32580 37 100.0 34 ..................................... GTCTAACAAAATATCGTCTACATACCTCAAAGTT 32651 37 100.0 38 ..................................... CTCGATAATAGCTTAACTGGTAAATATATCCTTCCAGA 32726 37 100.0 37 ..................................... TTAACTGCTTTCCCTGAATTGAAATCCGCCTGATTAG 32800 37 100.0 36 ..................................... GAGCCAGATTTATCAGAATTCAATGCATGGGTAGCA 32873 37 100.0 38 ..................................... CTTGTGTGTATCCGATGTCAGTCCAAGCACTGCACAGA 32948 37 97.3 0 ...................T................. | ========== ====== ====== ====== ===================================== ========================================= ================== 28 37 99.6 37 CTTGAAACTTAGCGAATCCCGGCAACGGGATTGAAAC # Left flank : GTAATGGTCAACTTAGGTTAGCTCAATATGCAGTTTACAACGATCCTGCACGACGTTTGGAATTAGTCCAAGCAATAGTTACTACCAAAATTCACAATCAATACAACGTACTATATCGCCATAACGAACGGGATAATCCGCTCAAACAACGCAAAACTATGGTTAAAAGCCAAAAAACTATAGACCAGGTGCGGGGAATTGAAGGATTAGCCGCACGAGAGTATTTTGCTTGTTGGCAAAGAATGGTGGGTAAACAATGGACTTTCAACGGTCGCAATCGTAACCCACCTACCGATCCCGTGAATGCATTATTAAGTTTTTCCTATGCTTTGTTGAAAACCCAAGTCACATCTGCGGTTCACCTTGCTGGACTTGACCCTTATATTGGCTATTTACATGAAGTTCATCACGGACAACCAGCAATGGTATTAGATTTGATGGAAGAATTTCGCGCCTTAGTGAGTGACAATGTAGTTTTAGGCTTGTTGGGTAAACGGGAA # Right flank : CGCAAAAAGTTTGAGTACGTTCCATAATTGACTGGTAGCTTGAAATAATAAATGAGGATATCGGTGAACCCGCCCCTACAACAATCAACAGTCAACAGCCAAAACCGATATTTTTCACAACTGAAATAGGATTGCTATCTTGACAATACTGTTGCTAATTCACGAGAATTCAACATTTGTAGAAACTAGAAATTATTAATTATGAATGGTGTTACTTTTGCCCTTGCGTCCTATGGGTACACACATCGGCGTTCCCAAAACTGGATCGGAAATAACACGACACTCTAAAGCAAAAACTTCTTTTACCATCTCCTCTGTCATTACTTGCTTGGGTTCTCCTGCCGTAAAAATTCTTCCTTGTTTCACAGCAACTAGATAATCTGCATAACGACAAGCTTGATTTAAATCATGCAGCACCATGACAATAGTTCTTCCCTGATTCTGGTTCAAATCATATAACAAATCTAAAACTTCTATTTGATGTGCTAAATCTAAAAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 39214-38670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000042.1 Calothrix sp. FACHB-168 contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 39213 37 100.0 35 ..................................... GACTAGCTGGATCATTCCATCAAATCGCTCGATAA 39141 37 100.0 35 ..................................... CATAAATATATTCCATAGTTGGTACTTGTTTAATC 39069 37 100.0 36 ..................................... CTAATCCAGTAAGTTTAACAGCACAAAGATATCAAG 38996 37 100.0 33 ..................................... GATACTATTGATTTTGAAGATACAGACATCTTG 38926 37 100.0 35 ..................................... GCCTGAATGTGGTCGTGTAATCCATCCATGTACGC 38854 37 100.0 38 ..................................... TGGCAATAGTCAAGTAAGTGGCAGTAGTGGTTTTATTC 38779 37 100.0 36 ..................................... AATATCCCCAACGAGCAGCAGCTAGATAATAATTGG 38706 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 36 CTTTCAAATTAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GGCCCCGCGATCGCAGCTGATAAAGGTATGTTTCCCAGCACCCACACACCAATACAAGGTTTGTACCGCGTTGGTGACAGCACCATACCCGGAATTGGTGTCCCCGCAGTCGCCGCATCTGGGATTTTATGCGCGAATACTTTAGTCTAGGGGCATGGGGCATGGGGCATGGGGCATGGGGCTAGAGAAGAGATATTTTCAAGTTTGATTGTGAGATTTGCTCGGAAATGACTAGCGTGAAGTTTTTGGCAACCTCGACAACAAGAAATAATCGTATTATGATGTCACCATCTAGTTGGTAAAGCGTTTTTTTGGCATGGGAAAGCGCGGGCGAAAACCCCCCACCTCCCGCAAAATCGTCAGAACCTTGATAATTAAATAGTTTCAGCGTTTAGAGTAATGTTTAGCTCGCTGTTGACAACGGCTGAAATGGACTTTTAAAATAGTCCCGCCAAAATTGCTTCTAGAATTTTGTCTGTGACTAGGTTCTGGCTGGCGGA # Right flank : GTGATTGCTGCTATATCAGCATTTTACCCAACAGCAAAATCTGTAAACTGTCTTTTATAAGGTGAGTGAAATCCTAAAACAATATCTTGCTTAGGAACGCCTAAAGCTACTAATTCATCAGCAATATTGGCTTCTGTGCCATTATGCTGAATCCAAATTTTTTCATTTTTAATATCTAAATGCAAAACACAACCATATACACGCCGTTTGTTTTTCCAACCAACATATACTAATTGATAATGGTCGTGTTCGCTATCAAATATAGTTTGTGCCTCTACCTGATTGTCAGATTTATAGTACAGGCTATATTCTGTTAATACCTGCTTTATATATTTTCTATATTCTTCTAATTTAGCCATTGGACGATTACCTCATTGTCAATGTCATAAATTACTAATATTAATTGATATTGTTGAATAATCATTTGCGTAAATGGCAACTGAAAAAAAGTTTCATAGGCATCTAAAGGAACTTATATTATCTATTTTCTCAAGCTCCAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 5457-5852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000044.1 Calothrix sp. FACHB-168 contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 5457 36 100.0 39 .................................... ACATAACAACGGGCTACACCAGCAAACCAATCTGATAGA 5532 36 100.0 35 .................................... GTTGAACCCCAGGTTTGCGCGATAGCTGTTAGTCC 5603 36 100.0 35 .................................... TTTCTTATCCTTGGTTCCCTGTGTGCAAGGCTTAA 5674 36 100.0 36 .................................... ATTTCTTTTTCCATCCTTGAGGGAGGCTTGGGATAT 5746 36 97.2 35 .........C.......................... GTAAGGTTCCCTACCTCGCCCAAGGTTGCTATCCA 5817 36 91.7 0 ..........................T....AG... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 36 GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Left flank : GTAAGGCGGTTTGGTTGTTTATTTTTGGGAGAAAGTGACCAATTGATTAAAACGATCAAACTTGCAAGGGAAGATTATCTAGAGGGGGTGCGACAGTGGGCGATTAGGGATAATCGAGGTAGGTTAACCTTACCCTATTGGGTTGACCATGTGGGGTCAAGAAATACTCGATTTTTGAGATATCGGATTGAGGAAATGACAAGTTCACTACCTCCTGATTTGGCGTGGACAATGATTCAATCCCCAATTTGACAAGTATCTCTTATGGTAAAGGGAATTTAGGGTAAAAGAATAGTGGAAAGGTTTACGCGGTAAGGGATATGGTAATTGAGGCAAGGAACAAGGTGCTTGCCATTTTTGGGAAAGTTTATCGGCACTTGGTTTGAGGGGCTGAAAGTAAGGGAAACTTTAGTAAGTTTTGTGTTTTTGGTTTCTCGATCTGAAAGGTACTTGTAAGATAGTAAATGAGCCTTGCTCAGTTAAGGGTTTTCACCTTTGCT # Right flank : ATGAGATACAGGTGAATTAAGGTTGTGTTTACCACAAATTCCTCTTCAACAACTACTTTGACTAGAAATTTTTCCCATTGCTCAATTTGATGAAGCAGTTCTAACCTGCGATAGCTACTTAGTGCAAATGAAGCAGAGAGAATTTCTATGCATACAAGAAAGAGAGGTAAATTGAATCACCTCTCCAAGCGATGGGATAGGTTCTTGTGTTTTATGCTACGTCGGCTACAAGTAAGCCATTAACAGCGATGATGATTATTTGTGCTGCCAAAGGAGTGTCACAGCATTGCCTGTCATCCCTATTACAGGGTTGTGCTACCCATTTCCCCTAGAGATTTTGTTAGAAAGTGCCAAGTAGTTGAGAACCATTCCAGACTTGATACAGTTCACCCAAGTTATCTGGTACTGAGTAAATTTCAATTTCTGGTAATACTGGGTCGGCAAGTTGGTCAATTATTCCTCAAACTCTGATTCAGCTAAGGTTGAGTGTTACAAAAATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 226078-225383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000006.1 Calothrix sp. FACHB-168 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 226077 37 100.0 37 ..................................... GCTCATCCTGGGGCGGGTGTGGATGATTTTTAAGATA 226003 37 100.0 37 ..................................... TAGCGATATGCGTACTGGACAAGCTTATCGCTGTGGT 225929 37 100.0 35 ..................................... AATAATTCCGCGTTCAGTGCGATAAACACGGTTTA 225857 37 100.0 35 ..................................... TTGTTATTCCCCCTGGTTCTGGTTTGCAGCTTATT 225785 37 100.0 35 ..................................... CCACTACTGGCGCGGGTTCAATAGGAACAACGGGA 225713 37 100.0 36 ..................................... AAATCAAAGAGCTTTGATTAGATGAATCTAGCCAAG 225640 37 100.0 35 ..................................... TAACGTTGACCGATTTCTTCCCTAGCGGCTTCTAA 225568 37 100.0 37 ..................................... AGGCGATCGCCTCTCACAAACTTTCACCCCACGCCAA 225494 37 100.0 38 ..................................... TCGAACTTGAGGCGATCGCTCACCTCATGCACCTCGAA 225419 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.7 36 GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAAC # Left flank : CGGGTATTTCTCTTTGTTCTTGCGGAAAAACGCCCATATCTGCAATTGCTTTAGTTTCCGATACAAGCAAGCAAGAGCTAAAAAATAAAACGGCTGTCATCAGTGTCTTTTTTGTAGCTATCATCACAATTATGGCTATTATCTGATTGTGGAAAAGATACGTAGTAGCGTAGCACGCCACTACAATTATGTTAACCGTCAAGTTGTACTTTTAAGTTAAGCTAGGCTTTGGATAAATTCGTCAAACAGGCTAGACAAGATATGTCAGTAGTATTATGATGAATGTATTAACTTGATGTTTGGCAAATCGAAGCGGGGGCAAAAACCCTATAGGTTCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTACAGCGTTTCGAGAATTGGAGAAGATGCAAATTATTTGCAATAAGGTAGGCTGAAAACGATTAAAATTTTCGATCTGCCAAAATGCTTCTCAGGATGCTTGCTGTGGTTAGGTTTCAATACCCAGCA # Right flank : AATACATTGGCTAAACAAGAAATGACTAACGCTCAAGGAAAAGAAAAATAAATGTAGGTTGGGTTGAACGGAGTGAAACCCAACAATACCAAAGTTTTCGCGTTGGGTTTCGTTCCTCAACCCAACCTACAGCTACATTGGTAAAAGCCTTGAAAAATAAGCGGTTTGAGATTTTTATTTGGTGAAAGTGATTAAAGAGGGTTAAAAAGAGCGATCGCAATCACGATAAATATTGTTGTTCTTAAAACTTCTGAATCTCCGTGTCCTCTGCGTCTCTGTGGTTCAATTAAATAGTTTTAAACCGCAGAGTACGCAGAGATCGCAGAGTGGCTATTTTATAACTGTCGAGTGTTGTGACAAAGCATGTAAATCTATGTTTAGTAATATTACTGAAAATATCAAGGCTTTACTAAAGCGTTACATCAGAAAAATTGGGTAGTAACTGGGTAGTAATTGGGTAGTTTTACCCTATATAACTACCGGAGATTTATCCATAATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 1 22472-22971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000063.1 Calothrix sp. FACHB-168 contig63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================================================================================================================ ================== 22472 34 85.3 140 T....................A...TG......C CCATCCACATAACACCAAAAACCCTAATATGCGTAGGTTGGGTTGAGGAACGAAACCCAACATTTTCCCGGATTTGTTGGGTTTCACTTCGTTCAACCCAACCTACAATTTATCTTTCACTGATTTAGGTTAATGTTTCA 22646 34 97.1 38 T................................. CTTGGTTATAAAGCAGTCCAATCGGCTGCAAAAACTGG 22718 34 100.0 38 .................................. CATTGGTTCGTGTTCTTTTTGCTAGCAGCCTTAGTATG 22790 34 100.0 41 .................................. CTAATCGTATATGAACCATTTGGCGAATTTTTATTTGCTAA 22865 34 100.0 39 .................................. CTATTAATCCCAATTTCTGGAGTTATAGGCTTCACGCTT 22938 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================================================================================================================ ================== 6 34 97.1 59 GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAA # Left flank : GCAATATGTAGAGGTAAAAATAGGCGATCGCTCTATAATATTTTGCAACGGACATTATTATTGGCAACCTGGTTCTACACCAGAACGGATGAAGCAGATACAGCTATTAGTCAATTGGCTGGGTAAGCTACCACCAGAAATCCCCATTATCGCCGTCGGAGATTTTAACGCCACTCCCGACACCCCCGAAATTGCATTTATCTGCGAAAAATTTACCTCAGCTTACGCCAGTTATCATGGCGAAGAACCAGAATATACTTGTCCTACGCCTTTGGTGAAACCTAACCGCAGCTTGTGGCGTAAAGTTGCACTGAGGTTACTGAATTTGTATGTTAATCGCACCTGGAAACCTTGGCGCGGTACTCTGGATTACATATTTATTAGCAATAATTTGACTGTGCGCGACTGTCAATTGATTCTCACTGAACCTGCGCCGGAGAATTCTAATATTTATCCCTCAGATCATTTTGGCATTGTGGCTGATTTGGGTTAATGTTTCG # Right flank : ACCCTACCCTTCTAGAACCGTTGCTATAACTGGGGTTGAAGGTGCCATTTTAGCGGGGGGTCTAAATTTACTGTCAATAAGCATAATTTATTGACATTGGAACATCAATACAGACACCTCAAAGCTTTATGTAGTAAGCGATTCGCGGGGGTCAACGAAAGAATCAGGGTTTGAGCGATTGCTCTACACCCGCGAAAAATTTACGTGTGTTTAGTCAAAACAAATACTTTTGTTTTCACTGGGAAACGTTAGATTCAGTTTTCAAGGTTCTGTAAATTTATCAAAGAGTATAACAAATTACTTGGAAATTTTTACTCTATATATTGCGAATGTAACATATCTAAAACTGGGCTTGGATTGTTTACAAAATTTTTTCAGCTTCAGCTTTCTGGGGTAACAGATCCCCGACTTCTTCGAGAAGTCGGGGATTTGAACACCATCAACTTCTCACAACTAATGAGACGAACTACTAGATAGTCTTGGTAAAATGCGAACGATAA # Questionable array : NO Score: 6.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-2.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 10437-11872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000068.1 Calothrix sp. FACHB-168 contig68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 10437 36 100.0 35 .................................... TTTTAGTTGCAACTGTCCTATTGTGTTGTTTTTTT 10508 36 100.0 49 .................................... ACCTCTAGGGTGTAACAAATCTCAAGCAACACCTTTGTGGTGGTGTTGC 10593 36 100.0 35 .................................... TCGTCGTTTCCTTTTGAAAATTCAAATGTGTACAA 10664 36 100.0 39 .................................... TCATATTCAGAAAAAGATTGGGTAGTCATAGTAATTATG 10739 36 100.0 42 .................................... AAGAACGGTCAAAACAATTGTGGAATCCATTGATGTTTTCCT 10817 36 100.0 36 .................................... GCCGAAATGAACGACCGGTGTAGGAACCGCCAACTT 10889 36 100.0 36 .................................... GCGTATTTTCGGAAATGTATTGGTTGATGCAATCAA 10961 36 100.0 37 .................................... TGTAGAGGAGTTACCGCCGCAGTGTCTTCGGCTACAA 11034 36 100.0 41 .................................... TTTCCTTTTGCTTCTTCCATAGACCAGTAACTGCCCAAAGA 11111 36 100.0 35 .................................... CGCATTGGCAGAAAGAGAAAAAGAAATGATGCTGA 11182 36 100.0 37 .................................... TTTTTTGCGTAGGTGAAAGGAATTGCTATTCCCCCAC 11255 36 100.0 37 .................................... GCACCAATTTGATAAACTGAATAAATCGAATGAAACC 11328 36 100.0 37 .................................... TTGATTCAATATCCCTGTTTCTTCTAAAGCTTTTTTC 11401 36 100.0 34 .................................... GTTCATATACAACTCCCCAAAGCAGTATATAACC 11471 36 100.0 40 .................................... TTTAACTGTGGCATTTGATAGCCTGTTAATGCAGTATACC 11547 36 100.0 39 .................................... GAAATTTGGTCGAAGTTTCTTGTCAACCTAGCTTTTAAA 11622 36 100.0 36 .................................... TCCAAACCCTTTGTCAGGTTTTGGTAAAAGATCTAC 11694 36 100.0 35 .................................... AAAAAAAAGTTCTCCCCGTGAAGGTAGATCTTTTA 11765 36 100.0 36 .................................... ATTTTTAGAAATCAATCAAACCAAAAGAGAATAAGA 11837 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 20 36 100.0 38 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : CGGTTTTAGCTGCCTGTTGAGTCTTGAGTCGGGAAGTTGGCATATAAGGTATAATTTTATAGTGATTTTCTTGTATTTGTGATATCCGAATATTAAATTTATATTTATTTGGATATGCTATGCGATGCCTTTGGCAACCACTTCGTGGTATCGCGTTAAATATTCACGGTATGTGTTTCATCTTAGTTGGGTACAAATGATAATTCTACGTTGCTCGTGCGAATAACCAATCAGAATATTATGTCTAACCAAGTCTGGTATCAAAGCCTTACTGTATCTAGGCTTGAGGCTAGTTTAGGAGGTTTTTGTAACATGACTATCTACACACCTCGGCAAATCGCCAAAACCCTTATTCTTTCGTTGAGGTGTGTCGATTGCTTACTGTGTAAGGGTTTGAGCTATGTGTTTGATTAATTTTGCGGCTGGTTTTACAATGTTTTTTAGAGGTGTGTCGATTTGCGGTCTGAAATCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : CAAAAAAGCCCTCATTAATATGAGGGCTTGTTATTTTTTTAATAGCTATTAATTGACAATGATAGCTGGCTTAAAAAGCGATTGCACTTTTCAAAATACGAATTACTATAGCCATCCTATTACAGTTGTGACAAATATCGGTTTTGGCTATTGACTATTGACTGCGCCGCACTGAAGCTCACGCGAAGTGTTGACTGTCAACGGTTAACAGTCAACAACCCTGTATGTAATATTTCATAAATCCGCTCTTCGGATTGCTAGATTTTTCGTCATTCGCATGAGAGAAGGTTGCAATTGGGGTCATATCTGCAACACTTGGTACTATAAGCGTTTGGTTGAAAATTAATAAGTAAGAGAAGAACCAGCTACTTTGACTGGCTGACTTTTTATGGTTACGAATTGTTACATAGATAAAGAGAATCAGTACTTTTGGGTAACAGCGAAGTTGCTCATTATACGATTCTTTTGGTGTTAGAGATTGTAGTTCAAGTTATTTACGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 20300-20990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000068.1 Calothrix sp. FACHB-168 contig68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 20300 37 100.0 37 ..................................... AAGAAAGGAAGATTTAGTTGACAAGTCTGATGACCCT 20374 37 100.0 37 ..................................... TTTTACCTTCCGCCTAACTAAGTACTTCTGCTCAATA 20448 37 100.0 35 ..................................... TTTAATCCGTTTTTCTCACTTCCCGCGTTGATAAT 20520 37 100.0 35 ..................................... CAATCATTGCTTGCGCTTTGATTTTTTCTTGTTCC 20592 37 100.0 34 ..................................... ACGCTATGAAATGCTAGAACTATAAACCCTGGTA 20663 37 100.0 36 ..................................... TAGCTATGGTGATAGACCTATCAGCGCTAGTATTCG 20736 37 100.0 35 ..................................... TTCTAGCACCTTAAAAGCCCAGTCATAAGCCTTAG 20808 37 100.0 38 ..................................... GTTTTAATTCAAAAATTTCCTGGGTAGTTGATTGGTGT 20883 37 100.0 34 ..................................... GTAAACACGCTCTAGAAATTCTCTAGATTCCCTG 20954 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 100.0 36 GTCTCCACTAACCATGTGGAGGCGCATAATTGGAAAC # Left flank : TGACGATCGCCGCAATCAACTATTACATAATCTCCGGGGAATGGAAGACGAAAGCGTAAAAGAATATTTACTAGGCTATGATAGTAATATTAGCGCCAGTAGTGTTGATGAAGCTTATGAAAAGCATGTTAAAGAGCCTTTTGTCTCAGCCTTAAAACTATTCAAGTTATTACCCGAACACCCTACCAATTTAAAACAAAAGCTTAAAGATATAGCAAATTCTATTTCTTGAATTAATTTATTGTCTAAACTGCGCGAACCAGGAGGTGTATTTATCGAACGCTTGTTATATAACCGCTAAAGGCTTATTAGCTATAGCTTAGGAGTTTTTTAATAAAAATGAGGTTCGCGCAAACTCTGTAATGTATATCAGGAAAGTGTTTGAGGTCATTTTGATACAGGGAGGACTTGACAAGCGATCGCGCAAACTGTACTTTTTTACTCTATCCGCGCAAACTCGTCTTGAAAGTCTTGTATATCAAGCCTTCTAGACTCCAACA # Right flank : CATGGTTGGCGATCGCGATAAGCCATTGTGGTATAGTCTCCAGTAACAACATGGAGACTTTTGCATAAAAAATCGTCAATCGCATCACAAATAGACGATTTTCTAATCTTCACCAACAATAATAAAAATACAGCAAATTGCAACTTGGTGAGATACAGATAATCGTTGATTGTAGGGGCATTGGCACTGCCATGCCCCGAAGCGCGTACCTCATTTACCAGAAATATGCTGTATCATACCTAAACGTAATGGTAATTTACGAGAATTAAAAATACCAACAGTACGCGATCGCATTGTTCAACAAGCTCTATTAAATGTATTTTATCCCGTAATGGAGGCGAGATTTTCTAGTGCGAGTTTTGCCTATCGTCCCAATTTATCTTATCTAAATGCAGTCGAAAAAATCGCTGATTTTCGCGATGAAGGTTATGTTTGGGTATTTGATGCTGATATCGCCAAATTTTTTGATAATATCTATCATGGACATTTAGCCAGTGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACCATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 16365-15529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000067.1 Calothrix sp. FACHB-168 contig67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 16364 36 100.0 37 .................................... AAATAATTTGTGGACAACGTTAATTAGCCGTCTTCAA 16291 36 100.0 37 .................................... TAAGGGTTCCATCTCCATTATAGAGAGTAGAAGCAGA 16218 36 100.0 38 .................................... TAAATCTCCTGGATTCAGAGTGTATAACTCTGGATAAA 16144 36 100.0 34 .................................... GGATGGCATCTAATCCTGCTTTATCTCCCCAACC 16074 36 100.0 41 .................................... ATTGCGTGTCTACCGGATGTACGATCCCAGACGGAGTCTCC 15997 36 100.0 35 .................................... AGATAGAAATAGAGAGAGTTTACAGCAACAATCAC 15926 36 100.0 35 .................................... TTTTTGGTTGCAAAATTGCCTTTAACAACTGTTGA 15855 36 100.0 35 .................................... ACAAAGCTATGCTCGCAATTGAGTGAATCTTTTAC 15784 36 100.0 36 .................................... AGGAGATGAAGTTTGTGGAATGGTAAATTCCAATTC 15712 36 97.2 39 ..........G......................... ATTACTGCTCCTGCGATAATAACTATCAGGATAAGCAGC 15637 36 97.2 37 ..........G......................... CAATGTCACCAATTTCAGCCTTTGGGTTTGCTTGAAC 15564 36 94.4 0 ...............................A...G | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 99.1 37 CTTTACGATCACATCGCCCCGCAAGGGGATGGAAAC # Left flank : CGTACCCGTAGTGTATCGCCATCCCCGACACTAACTACAGTCATAGCAGGTAAGTTGGTTTGAGCAGTAGACGGAAGCCCAGAGAGCAGCATTGCAGCTATTGCAAGGACAGCAGTCTTGTTCATGGTGAATATCAATGTATTACTGGTAATAAATTCTACTTTCCATGACCTTAATCGTCCGTGATAAGCATCACTGTGGGCGGGTAGCGATATAGTGCTGCTTCCCCACCGCCATTAACTTATTTATCCAAAGCTTGACAGATTGAAGTAGCACATATTACTTTTTTACCTAGTGCGATGAACCTCATCGACACCACTCACCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGTATAGTTTCCAAGCTGTGAAAAGCCAAATTTATTGATAATTTTCAGTACTTATTGACACTATAAAAAGTGGTGTCGATTAGGGGGTCTGAAAGCCTTGCTATGTATAGTTTCCAGAAGTGAACT # Right flank : ACAAACCCTTCTCCAATGAATTAAAGCTGTGGTAGGTAATTTCTGATCGCATCGCCCCAAAAATAGCAGCATGAACCAGTTCAAAATCCAGTCCATCTCCATCATCAATGGCTGTACTTTGTTGGTGTATTACACTAGTGGAAAATCCTGGCAGTTTCGCGTGATTAGTCCAGAGGGTGAGGTGTATGGTTCGCGCAAAATTTTCTACACGAGCGAAGCAGCTAGAGTTGCTGGAGTCAGTTGGGTTTGTGGCGAGAAATAAATTGATAGATGCGGTGTAAGTTAGCCAATCAAAACCTCAGCCACTAACATCCGATTCCATTATCGGAATGTTAGTTGCGTTTGGATAGTTCAGCAGTGTGAAAGCCCCGGTGATGTACCGAGGGCTTGTTGTTCATAACTTTCGGCTTTCTCTGAAATACGACCTTTGAGATTAAGTTGCAGTGATTAAGCTCTTGGCTTTAGTTAAATTAGTCTGAATCCACTATATTGCTGCGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 4632-4378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000011.1 Calothrix sp. FACHB-168 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 4631 34 100.0 39 .................................. AGGCAGATGTCACGGCAGATGCTGGCTGAGGAATTGGGT 4558 34 100.0 37 .................................. AGATAAAGATGTCCCAAAAACCTCAAACCATGTAGGA 4487 34 100.0 39 .................................. CGGACAATGCTCAATTTATCTATCCTCAATATCTAGCGG 4414 34 94.1 0 ...................TA............. | AGT [4398] ========== ====== ====== ====== ================================== ======================================= ================== 4 34 98.5 39 GTGCTTCAACATTAGATGCCGTTAGGCGTTGAGC # Left flank : AGGTGAAAGTCGGGATTTAGTAAATGATATTACCCTCTTACCAAAAAATTACTATGCAGAACTAATGCGATGGTTAATCCAAGATGAATACGGGTTGTTAACTTTACCTTATTGGGTAGACCATGTAGGTTCGCGGGGAACACGATGGTTAAGTTACGAGATTCAAGAATGTCAAGTATTGCAACCACCTGAATTATCTTGGACTTCAGTTCAAAGTGATTAGAGGCTATTATTTTATTTTGCAAGTACCTTTGCTTGGGAAATCTCAATACCATGAGCAATAGCCTTGTCGTCTTATTTGACAAGCCTTTTAGGGATTTTATATGCATCCTAGATGCTTGCAATTTCCTGTAACACACTCAACACAAGAGTTTACGGCTTGAACAACTTTCCTTGTGCTATGAATAGCTATTAATTTTTGCAACTGGACTAATCCTGAGTGATAGATGCTTGTAAAATTGAACTAGAGCTTAGGCAAGTCAACAAGTTTGGCGATCGCC # Right flank : AACAAGATAGGCTCAAGTATTTGCGTTTAATATACTGATATCTTTCACCAGTACAGATGAATTGCTTTCCTTAAGAGGCAACTGGTGAGTATAAATACGTTCTCACTGAGTACAAAACTAGTCCTCTTGAGTCTCGTCTTTCCAAGAAATTTTAGCGATAATTTTTTCCCATTCCTCAATTTGCTTCTGTATTTGCAATTTGCGATCGCCTAAATCTTGTCTATCATCAACAGGCAAACCCTGACTGGTTAACCGTTCACGGTAGAGAGCAATCAGTTCGTTTAGGGCTTTTTTATTGCTTGCTGATCCTCCAAGCTCAGAGAACTCACATTGACTGGAATCAGCTTTCTACCAATTCTCTCCACAAATTCAGACCGACTTAAATCCATGCTCTCGGCGATCGCATCTAATCCATCAATCCCAGTAGGAGTTAGGGCTAGGTTAACTCGTTTCTTTACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTCAACATTAGATGCCGTTAGGCGTTGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 10459-10716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQF010000088.1 Calothrix sp. FACHB-168 contig88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 10459 38 100.0 36 ...................................... ATGGCGGTGTTCACAAAATTACTAAAGCCTTTAACA 10533 38 100.0 35 ...................................... CAATTATCAATTCAATTTTCTGCTCTTTAGTCCAT 10606 38 100.0 35 ...................................... ATCGCTCAAGGTAAAGATGCCTGCATCAAATATCT 10679 38 94.7 0 A....................................G | ========== ====== ====== ====== ====================================== ==================================== ================== 4 38 98.7 36 GGTTTCAACAACCTATTACCCCGCAAGGGGATTGAAAC # Left flank : AAAAGCTGATGGAAAACGGAATTGATTTACCCTTCCCCACCCAGCAAATTCTCTTTCACGATCAAACAGAAGAAACAGATGGCGATCGCTCTCGTCAACGCGAAGGCTGGCCTGCGGTTAAAGGTAAAGTCCCAAAACCTCGCCGCATCAGCGATTCACTCAGGTTACTTGCTCAATCCCACACCTCATCAGATGGTAATCACAAAGTAGATTCTCACAGCAATGAATCTTAAAGAACTACCAAGGAATTTCTCACCGAGAGTTGAGTATAATTTGATTATTCATGTATTAGCTTGACATTTGGCATATCCAAGCGGGGGTAAAAACCTGGGGGGTTCCGCCAAAAATGCCAGAACCTTGACAAATCAATAATTACAGGGTTTCAATTCTTAGGGAAGTTGCCAATTTATTGCAATAAGGTAGGCTGAAAACGACCTTTTTTTTCGATCTGCCAAAATCCTTCCTAGAAAGTATACGGTGTATTAGTTTCAAGACTCAGG # Right flank : GAAATAGGATTGCTGAATTAGGGGATGAATTTTGATTTATTGAAATTTTCTACTCCTCATACCAAACTGCAATCTAAAACCTAACATTGAAATCCACACAAGGGCGGGGAAACCCCACCCCTACCAAAATCTTAATTACATATCAAAACGCGGATTGATATTATTCTCTCTGCGCCTCTGCGCCTCTGCGTGAGATAAATCATCCCGCATTTATGCAACCCCAAGAAATATATGATTTTCAAAAAAAAGCGATCGCCTAACTACTCAATTACGAATTATTCCTCAGCTAATTGACTCACAATTCTGGCAAATTCATCTGTCATCCAATCATCACCAGTTTCACGATAAACTTCCAGCAACGACTTATAAAACCATAAAGTTTTTTCTCTACCAATTTTTAAATGACTCCAAACAATATCACCATATATCCGCGAATCTATTAATAACGATCTAGCATTATGCAACTTATCGGCTAAAGATACTCTGCGCACAGAAGCAGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCAACAACCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //