Array 1 2911-2417 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAEF01000038.1 Campylobacter coli strain MON331 1010700038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 2910 37 100.0 29 ..................................... AGTTAATTTATAGATTCCACTCTAAAATT 2844 37 100.0 27 ..................................... ACTTTAGATATTGTAGAAATTTTATTT 2780 37 100.0 29 ..................................... CTCTCAAGCTGAAATATAAAATTTGGATC 2714 37 100.0 29 ..................................... ATGCCATCTTATATCTTTATAAGGGTTTC 2648 37 97.3 29 C.................................... TTCTTTGTATGAAAGAGTGGGAGTTTAGT 2582 37 97.3 27 ....................................T CTATGTTTGCAATAATTTCAACTGCTT 2518 37 100.0 29 ..................................... TTCGAAAACATATGTAGCGAAATAATAAA 2452 36 75.7 0 A................T.....T..-.TA..TT.T. | ========== ====== ====== ====== ===================================== ============================= ================== 8 37 96.3 29 TATTTTATCATACAAACATTTAACAAGAGGCTAAAAC # Left flank : TTAGTGAGAGTAGATTTGTTTGTAGATAAAAAAAGCAAATTTCATGCAGTACCTATTTACAAAGCAGATTTTTCCACAAAACAACTTCCAAATAAAACTCCTGCTGCCATATCAAACGGAAAAATCAAAGAAGGGGTTGAAATGAATGAAAATTATAATTTTTATATATCATTATATAAAAATACCCCAATTAGCGTGAAAATCAAAGGTATGGAAGAGCCTATCATTTGCTATTATCACGGTTTTAATATTTCAGGAAGTCAAATAATCTACAAAAAGCACGACAATAATTATTATAATCTTAGCAAAGATGAAATGGCTATTTTTAGAAAAGGGGATAAAGAAGCTATAGCTATAGGAAGAATGCTTGAAATTAAAAAATACAACATAAGTCCTTCAGGTGAATTAATTTTGATTGAAAATGAAGAGCGTAAATGGTTTTAGATATTTTGTGAAAAAATAATAAAAAACATTGATAAAATAGGCTTTTAAAATAAGTC # Right flank : CTCCTGCCATCATTTTTTTAAATAAAAATTTTCCTTAATATACTTTCATCAGAGCCTTTTAAAAAATAATAAATTTTCTTTCTATAGCTTGACTCATCTTTTTTCCAATTGTTTAATGTTGCTAAAGGAATTTTTGTAATGTCAGCAATTCTTGAATCATGCAAGCCTATATTATCATAGCTAATAGCATCGGAGAATATTTTTTTTAATTCTTCTTCATTTGTATTTTTTAAAAAAAGATATAGCTTAATTCTCCAATTATTCTCTTTTTGCTTCCATTCCCTGATGGTAAAATAAGGAATATTAGTAATTTGTGAAATTTTTACATCATTGTTCATCAGGCTTAAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGATGATCAAAATGATTTAAAGCCTGCATATTACTAACTCTAAGAAGCCTTATTTTCCCATCTTTTTTGTAAAACACTTTAAAAACTTCATCACTTTGTTTGTGTTTTACCATAT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTTATCATACAAACATTTAACAAGAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 6219-6386 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAEF01000047.1 Campylobacter coli strain MON331 1010700047, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6219 36 100.0 30 .................................... AATAGCATCATGTCTCTTTCTTAATTTGAA 6285 36 100.0 30 .................................... TACAAAAGAAAAAAGATTGCAAGCATGTCA 6351 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 ATTTTATCATACAAACATTTAATAAGAGGCTAAAAC # Left flank : TTTTAGCCTTTAGCCCTATGGCACTAGAGGCTAAAATCTATGATAATGTATATATTGCTCAAAAGCAAGCATTAAAAGAGGCAAAATTAATGGTTTTCTTTGTTCTTTCAAACACTTGCGATTATTGCCACAAACTCATGAACGATGTGCTAAACAATAGAGATTTAATGGAATATCTTGATGAAAATTTTATCGTTGCTATCTCTGATTTGAATGCAGATGGGCTAATTCCTAAAGACTTATTATTTAATGGAGTGACTCCAACAACTTATATTTTAACTCCAACAGGAAAAGTGATAGGCACCCCTATTGAAGGAGCGGTTGACTCTAATATACTTTTTGGATTATTAAGAGGTTTGGAAGATTATAAGAAAGGACAATTAGGTTTTTAGAATGGCTATTTCTACGGCTTTTGTCTTATACACCTATGAATCTGAGCGGATTAAAAATACTATTTAACAAAGAAAAACAATGATAAAATAGGCTTTTTAGAGAAGTCT # Right flank : CATTCATTCAAAAATACTATAATTAAAGTGTATTAAGTATGGCTACTCTTTTGGTTATAAGAAGGAGGAATAATGAGTAAGATCATTGAGTTTTTAGTTCTTGTCTTAGAATTAATTAACGAGATAATCAAGCTCGTTAATTATCTCATCTAATACAGCCGTTGAAAATTTTATAAAAACCACGCTTAGTCTAAGCTTAATATAATTGTAGCAAAAAACACTTAATCGAAAGAGGCGTGGCTTTCGGTTTGCATTATTTTGGATTTAAATGCTTTTTTAATTCTCTGTTCCAATAAAAGAAATACTTTGAATCTAGTTTATTTAGCATATTTAAAATAAAATTATTTATTTTATTTTTTTTAAAAACTATTAAATATATCTTATCATTATTTAATTTATAATTTTTATAATCTTGTGCTGTAAAAATTTGATTAAATAAAGAATTTATTTTATATATATTATCCTCATGAGTCATAAAAATTTCATACTCTTCTAAAAGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATCATACAAACATTTAATAAGAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //