Array 1 187995-187598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018028.1 Alteromonas mediterranea strain CP49 plasmid MCP49-600, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187994 29 100.0 32 ............................. ACTTGATGATGAGTCTTTTTTTAAAGCAGTAG 187933 29 96.6 32 ................T............ GTAATGGACTTATTGTGTGCGGCCGCAGAGAA 187872 29 100.0 32 ............................. CCAAGGGCTTAGGGACTGGTCAAAGACCAACC 187811 29 96.6 32 ................T............ TCAATAAAGTGCGAAGAAGGCATTGGCTCTTT 187750 29 93.1 33 ............C...T............ TGAAAACCTGATAATGTTGACTCACTAACAGGT 187688 29 89.7 33 ....A.....T....T............. CAACATCGAGTATCGAGCAATATGGCCATGTGA 187626 29 86.2 0 .....................A.A.T.T. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 94.6 32 GTATTCCCCGCGTAGGCGGGGGTGAACCG # Left flank : GAAATCAATCACATTGATGCGATGATTAAAGTAAAGAAAGAATCTAAATCCGGTGCAACCGAAACGATCCAGCGGCCACTAGAAGGTTACGAAGCCATTGTCCCCGGTACTGTCATGCAACACCGTCTTCCATTAACAATGGTCAACGCAATGGAGATGGCACTCTTCTTAGAGTCTCTTGCTACTTACGCTAAAAACCCCGTAATAGGTGGACATAAAAACCATGCCTGCGGCTTCTTCAGCGCCACTTACGCCATTCGTCATTGGCCCGAAGACGAAGATGTCTCGCGCGAAGTCGCGAGCATTCGCTTTAATGAAACGGGCTTTTTTATCGAGGGTGAAATTGCTGATGAACTACAATCTATTCGCAAAACCTTCAGGACCGCAGTAAGTGATGGCAAATTTAATTTCAAAGCCTTTTTATTTAAGCATGCTGTCTAAACGATGGTGGCTTGAAAGCAGCCATTAAACTTGTTCTTTCACAATGTTTTACAGTTAGA # Right flank : ACTGATGTAGCTTATTCGCTCCACCACTCATCATGAGAAGAAAAAAATACCGTCCACATGATAATATCAGTGTATATAAAGGACTTTTGAAGCCACTGTTATGCCATCACCCATCAACATCACACTTATCTCTGAACCAAGCAAAAACGAGATCATATTAAAGAATGGTAACCGGAGTATTACCTTCCCTCGTAATGAGCTCCCCTTCCATTTGGAGATGACTGTGCAATCACACCCAAGTTACACAGCAGGCTCAACGATTCCCGTTAATATTGAATATGTCTCCCCTGATGAACAGAACGTTCTCAGAGTATTACCTAAAGGGGCTTGGCTGGCGCGAAACACCAGTGATGGGACAGTGACCCTATCCCCCGATGCAAACGCAGTATCAAAAGGCGAGGCACACCCTGTCATGAGTGGTGTAACTCATGTCATGCAGGGACCCGTGGCGAGAGTATTTCCCGGGTTAACGACTGAGAACATGCACAACTTCGCGGATA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTAGGCGGGGGTGAACCG # Alternate repeat : GTATTCCCCGCGTAGGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 901553-903021 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018027.1 Alteromonas mediterranea strain CP49 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 901553 28 100.0 32 ............................ AGCCGGATGAGTAGCCGGTAATGGGGTGTGAC 901613 28 100.0 32 ............................ TCACTACGGCATTAGAAAAAGTCGTGAAGATG 901673 28 100.0 32 ............................ ATTGCTACTGAACAGCAGATTCAAGCGTTTAA 901733 28 100.0 32 ............................ TGTATATGTACCCGTTATCGTAACGCTTGCGT 901793 28 100.0 32 ............................ TTTCAGTTTAGATAATGCGAATTTCACAACAA 901853 28 100.0 32 ............................ ATACACAAGGGTTGGCCGTGCGCGTTTGGTGT 901913 28 100.0 32 ............................ TTACGTAAGAACCCAAGCTTTCTATTGTAAAC 901973 28 100.0 32 ............................ TGTACTTTCTATCGGGGGTAAAGACTCTACGG 902033 28 100.0 32 ............................ AAAACGTTGATTGGTCTGACGCTGACAGTTTA 902093 28 100.0 32 ............................ AGAGTGCGTAGGCAGACCTTCACCTTCGTTAT 902153 28 100.0 32 ............................ ATGCGTTGCGTCGGTGTTTTCCGCATGTTCAT 902213 28 100.0 33 ............................ TTTGCGGCACTATCCGGTCTTATCTCGAATATC 902274 28 100.0 32 ............................ GTACAGGGAAATAGCGAGAAGATACGGCGTAG 902334 28 100.0 32 ............................ AAGCTCTTCGCTGTGAAACTCTGCGACTAAGT 902394 28 100.0 32 ............................ AATGCAAAGCAACAGTTCGAAAGCAACTATAA 902454 28 100.0 32 ............................ GAATAGACATAACACATCGGGTTCTCTTGCTC 902514 28 100.0 32 ............................ TTACGTAACGACAAATCAGCGCGTCGAAATTC 902574 28 100.0 32 ............................ AGTAGCGCGAAGTAGTATGATTCGAAAGAAGC 902634 28 100.0 32 ............................ TTGGATGTTATCAGCATGGAAGAAATCTCCTG 902694 28 100.0 32 ............................ TTTCATGGCGGTGAATGGGTCAAAGTTACAGT 902754 28 100.0 32 ............................ GGTGCTGGGTTCACGTTATGGCTTTGTTGAGT 902814 28 96.4 32 ...........T................ ATTACGCACAGTTAGCAAAGTCGGGGATTAAG 902874 28 100.0 32 ............................ TAACAAGCGCGATGAATAATCAGGCTACACAG 902934 28 100.0 32 ............................ TTTAAGGTATGTTGGAACTGAACGTACTTTCC 902994 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCATGGCCGCACAGGCCACTTAGAAA # Left flank : GTAGATAAGTTGAAAGAGTTACAAGAATTGAATTGGCTGGGGCCTTTGATTGGTTATTGCAATGTGAGTGATATTTGCCCTATCCCAGAAATAGTTCAACACCGAAACGTTAGAGAGATACGTTCAAATTTAAGTAGCTCAAAGTTACGCCGGTTGGTTACAAGAGGGTCAATTGATAAGCAAGGAGAGAAACGCTATAAGATTAAAATGTTATCTAACAGTTTTGATAATCCTTACCTAGACATTTTGAGTAGCTCTACCGGGCAGGTTTATCGTAAGTTTTTCTATTTTGGAGAAGTTCAAGCGGAACCAATTGTTGGTCCTTTTGACTCATATGGCCTGAGTAAGTCAGCTACAATCCCGTGGTTTTAACCCATTAAAATTGTTCTTTAAAAAATTGCTATTAAAATAATGAGTTACGAAGGTTGGTGAAAATTTGGTGTTTTAGATATTTACGAGCCAATTCCTTGAGGCAACTCATTTTTTTGTGTTATTTTCGT # Right flank : ATACAGAACGGTAGCATTTCTCTAATGCTTAGAGCACCAATGGTAATTTAGGTTACGCGTATAAACTGTAGCACATATGTAGCACAGCAAAATATTGTTGGTAGTTACTATCGCTTGAAGCTAGAAAAAATGGTGGCCCCACCCTGACTTGAACAGGGGACCTGCCGATTATGAGTCGGATGCTCTAACCAACTGAGCTATGGGGCTTTGAAAATTATCGAATAAGAGTGATGACTCATTGCGGATGGGATGGTGTTATCAATCGTGTAAGGTGAATGCTGATCCCCCGTTTATGGGGTAGAGCCTAGAGCCATACTAAGAGCTTATACTTACCCGACTAAAACTGATTTCGCGAAAGTTATGTAAGTGGAAACTATCGCTTGAAGCTAGGAAAGATGGTGGCCCCACCCTGACTTGAACAGGGGACCTGCCGATTATGAGTCGGATGCTCTAACCAACTGAGCTATGGGGCCATTTTGAAATGTGCTGTGAAGTTTTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCCGCACAGGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //