Array 1 323309-324984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRG01000001.1 Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024716 CFSAN024716_contig0000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 323309 29 100.0 32 ............................. CGGCAACAGTAGCCACTCAGGGTGGATGGTAC 323370 29 100.0 32 ............................. TGCTACTGCTATCTGTAAAATAGCGCTTAAAT 323431 29 100.0 32 ............................. GGGCGGTAACAGAATGAGCAAACCCACAATAG 323492 29 100.0 32 ............................. GTGGTTTCATCCTGATTAATCATCGAGCGCTC 323553 29 100.0 32 ............................. TCCAGAAATAGATAAACGGTCATCGTGTGGAT 323614 29 100.0 32 ............................. GCGGCAAGAGCGTTAAATACTGGCCTCAATGA 323675 29 100.0 32 ............................. GGGGAATGGTCGGTAATTTTGACGGACGGTGA 323736 29 100.0 32 ............................. CCACTGTCGGTGTTGATCGCGCCGATATTGAG 323797 29 100.0 33 ............................. TGCTGGCCGCTCGACGGCCGGGCCACGGCGTGC 323859 29 100.0 32 ............................. TAAATCATACCGGTACGATAGAGTCATATGAG 323920 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 323981 29 100.0 32 ............................. TCGAACAGCGACTCCGACCAACCACTGCCGGA 324042 29 100.0 32 ............................. CGCACTCGGTTTACTCACCACACCCGCGATTG 324103 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 324164 29 100.0 32 ............................. AGAAACCGCTTCGTCTTTGCCCGACTCGCTTT 324225 29 100.0 32 ............................. TATCCCGGTAGGGATAAATTTCACAATCAGGA 324286 29 100.0 32 ............................. GTAACGACGGTTCCGGCGCTGGAAAAGGTGAA 324347 29 100.0 32 ............................. CTGTGCTTTCTTTTCGGCACGCTCGCACCGGT 324408 29 100.0 32 ............................. GGATCTAACGAGCTGTAAAAATTCCGTGTTTT 324469 29 96.6 32 ............................A TAAATTGCGGTTTTACGGTTCGCTGAATGTCG 324530 29 100.0 32 ............................. CACCCACATCCGATTTAGCTCCATATATCCCC 324591 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 324652 29 100.0 32 ............................. CATTAGACTCGTATGCGACCGCTATCGGGGGA 324713 29 100.0 32 ............................. AGCGGGAAAAAATCGAGAAATATATCGACGGC 324774 29 100.0 32 ............................. TCGCGCGTTAATGAGGCCTTGCGTACCTGGGG 324835 29 96.6 32 ............................T CGTTCATCGGCAGCGTCACGCAATATGAAGAT 324896 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 324957 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTAACTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 341241-342796 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRG01000001.1 Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024716 CFSAN024716_contig0000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 341241 29 100.0 32 ............................. TAGAGTTTGGTTCTGTTAGTCTCGGGGCTAAA 341302 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 341363 29 100.0 32 ............................. TGATTGCAGTTGCTTTTCCAGTTCGTCAAATC 341424 29 100.0 32 ............................. ATTTTCTATCTCAACGGGCAACTCACCGATCA 341485 29 100.0 32 ............................. ACCCTGGTCAGTCCGATCACGGGGTTAAGCTC 341546 29 100.0 32 ............................. CATCGCCTTGCACTGGGTAAGAGGCCCGTCAG 341607 29 100.0 32 ............................. GCATTTATCGCAGTAAAATTCTTCTCGCCTGT 341668 29 100.0 32 ............................. CGCCAGAAATCTCTTCAGGGTGAAAACTATCT 341729 29 100.0 32 ............................. TATATAGTGCAAATTTTGCGAATTACGCACTG 341790 29 100.0 32 ............................. TCCGCGCCTGGCCCTGGTTATTGCCACTTTCC 341851 29 100.0 32 ............................. GCCGAACGTCCAATATATTGGGGTAGCAAAAA 341912 29 100.0 32 ............................. CTTAGTGTATCGGCTACAGCCCAAGCTATGCG 341973 29 100.0 32 ............................. TTGATGACGTCGCCCTCGCCATCTGCGACCTC 342034 29 100.0 32 ............................. ACTGAAACTACAGGCAGGGTAGCGCCGATTTC 342095 29 100.0 33 ............................. TTGAACAGCAAGGAGGAGGCAGTGAAGCAAGGC 342157 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 342218 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 342279 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 342340 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 342401 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 342462 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 342523 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 342584 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 342645 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 342706 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 342767 29 93.1 0 A...........T................ | A [342793] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGACAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACTATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //