Array 1 1262-684 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXJI01000266.1 Pseudomonas otitidis strain PAM-1 NODE_266_length_4348_cov_6.21275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1261 29 100.0 32 ............................. TTCGACAGCTCGTCGTAGATGACCTCGTCGGC 1200 29 100.0 32 ............................. CCATCGAGGCTGGGCGCCAGTCGCTGCTGGAC 1139 29 100.0 32 ............................. ATGATCACCGGCGACGGGGAGTCGATGGCGCC 1078 29 96.6 32 ......T...................... ACGCCGAGCCGCACATTGTGCGCGTAGAGGTC 1017 29 100.0 32 ............................. TTCGCGGTATGGGACAGAAGGACGGACCTCGG 956 29 93.1 32 .C.......T................... GTGGTGTGAGATGGCCAACCAGCGGCTTCGCC 895 29 96.6 32 ...........T................. TACCAGGCTCTGAACGAGCTGACCCTGCGCTG 834 29 100.0 32 ............................. ATGTTGTAGACGTTGCCGGGGCCCGGGGCTTG 773 29 96.6 32 ............A................ CTAGCGGAAATCCACAAGGGGTTCCTCATGGT 712 29 86.2 0 ............T.C.......C.....C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GAAGAGACCATCCTCCCGCGCCTGTACCGCGAAGCCCCGGTCAACTCCATCTGGGAAGGCTCCGGCAACGTCCAGTGCCTGGACGTCCTCCGCGCCCTGTCCAAGGAGCCCGGCGTGCTCGACGCCCTGTTCAGCGAACTGGGCGACGGCCACGGCGACGCCCGCCTCGCCGCGCAGATCAACAACCTCAAGGCCGCCTTCCACGACACCGCCGACATCCAGTACCGCGCCCGCCAGCTCACCGAAGACGTCGCCGTCGCCCTCCAGGCCAAGCTCCTGCTGGAGGCTGGCAACGCCACCGTCTCCGACGCCTTCATCGCCAGCCGCCTCGGCGGCAGCGGCCGGGTCTACGGCACCCTCCCGCGCGGCATCGACGTCGAAGCCCTGGTCGCCCGCAGCACCCCGCACCTGGCCTGACGCCACCCTGGCAACAGGGGGAAACAGCCGGTAGATTTTCCGCTGCCGGCTTTTCCCTCTGGGATCAGCGGGTTACGGGAAGA # Right flank : ACCCCAAACCGTAACGGCCAGGCCCCCACTGCGGGGCCTGCGTAGGATGGGGTGAGCTTGGCGAACCCCATCACCCGGCCGCGCCCCGGCCCTAGGCCGCCCGCTCCGCCAGCCGGCGCTGGCCGGTCAGCGCCGTGGCCACGAACAGCGCCGCCGCCAGGCTTAGCGCCAGGGGCAGGCCGTGGGGGCCGGTGCCCATCAGCGCACCGCTCAGCAGCGGCCCCACCAGGCTGCCGATGCCCCACAACATGCCCACGCAAGCGTTGGCGGTGACCAGGTCCTGCCCGCTGAAGCGCTCGCCGATGCGCACCAGCGCCAGGGTGTAGACGCCCCCCGCCACCGCTCCCAGTAACACCAGCGCCGGCCACAGCAGCGTGGGCCGGGTGATCAGCCAGGGCAGCGCCATGCCGATGCCCAGCGCCGCCACCCCGCAGACCAGGTGCAGGCGGCTGCGCTCGGTGCGGTCCGACAGCCAGCCCAGCGGCACCTGGCAAACCATG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3825-4403 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXJI01000213.1 Pseudomonas otitidis strain PAM-1 NODE_213_length_8708_cov_5.14497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3825 29 96.6 33 ..............T.............. CAGTACGTCCAGGACGTGCAAGAAGGCGTGCGC 3887 29 96.6 32 ..............T.............. CGATTTCTCACGGGATCACCTACAGCAGCCAG 3948 29 96.6 32 ..............T.............. GCCTACCCGACCGTAACGCTCCAGATGAGCGA 4009 29 96.6 32 ..............T.............. GAGGACAACCTGATGATCGTGGAGCAGCACCG 4070 29 100.0 32 ............................. AAGGTGGATTGGAACGACCTGCATCAGCAGTG 4131 29 100.0 32 ............................. GCTCAATGGATTGGCTGTTCTAAAAGGAAATC 4192 29 100.0 32 ............................. AACCTCAACTGGTTCAAGTACGGCGATAACAC 4253 29 100.0 32 ............................. GTCCCGCCCTTCCTCTACGAGCCGGAGAAGAA 4314 29 93.1 32 ..............T...A.......... GCATACGAGATGCCCGACAGGGTCAGGAAAGC 4375 29 75.9 0 C..........AAA...........G.GT | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.5 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : GGGTCGCATCATCCCGCTGATCGAAGAGGTGCTCGCCGCCGGCCGTATCCACCCGCCCGAGGCGCCGCCGGAGTCCGTACCACCGGCCATCCCCAACCCCGACAGCCCCGGCGATGCCGGCCACCGGAGCCGCTGATGGCCTTTCTCACCGTGGTCACCGAGAACGTCCCGCCACGCCTGCGCGGGCGCCTGGCCATCTGGCTGCTGGAGGTGCGCGCGGGGGTGTACATCGGCGACGTCTCGCGGCGCACCCGGGAAATGATCTGGCAGCAGCTCGAAGCCGGGTACGAGGACGGCAGTGTGGTCATGGCCTGGGCCAGCCAGAACGAGTCCGGCTACGACTTCCAGACCCTCGGCAGCAACCGCCGCGAACCGGTGGACCATGACGGCCTGCGGCTGGTGGCCTTCCTGCCGCCGACCACCGCAGATTCCACACCCAAATAATCGGTAGATTTTCAGGAGGTGATTTTTATCTTTGAGAACAAGGGGTTGCAGTTGGT # Right flank : TCGCGATCCTGCCGCCGCTGCCAGATCTTCCGGCCGCCCTGGTCTTCGGTCACCAGGTAGGGGTCGCTGAAGCGGTAGCGGGTGGCGGGCTGGTAGTCGGTGCTGCCGTCGGGGCGGACCAGGAGGACGCCTTCGGCGGTCTGCCATTGGCCGGCGTACTGGAGGGTGCCGTCGCTGTCGTAGCTCCAGTCGGAGCCGCCGCCGACGGAGCGGCTCCATTGCTCGACGCGGCCGTCAGGGGCGAGGTGCAGGGTGAGCACGGTGTTGAAGGAGGCGAAGCTGGCGCCACCGCTGTTGATGATGTCTTCGTGGACCCAGGTGCCGACCAGTGCCGGGTCCAGGGTGCCGGCGCTGGTGCGGGCGGCGCCCGTGGCAGTTGAGGGGCTGCGCTGGAACAGTGCCTGGCGCTCCAGCACCTGGCCGCTGACCGGGTCGCGGGCGGCGAGGCGGGCGTTGAGCTGGTCATTGCCGTAGGTGGCGGCGAGGGTGGCGATCACCTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //