Array 1 3930-3352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAUY010000050.1 Streptomyces sp. SMC 277 50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3929 29 96.6 32 ............................A TCACAGCCAAGGCCGCGTCCAACCGAGAGGGT 3868 29 100.0 32 ............................. GCGTCGCCGGTACCGGGCTGGGTCGGGTTGCC 3807 29 100.0 32 ............................. CCATAACGCACAAGGAGATGACGTGACCGTCG 3746 29 96.6 32 .............C............... GACGTCTTGCCGACACCGATGGGCCCGTGGAT 3685 29 100.0 32 ............................. GTCTACAAGGTCCGCAACGGCAAGCAGACGAA 3624 29 100.0 32 ............................. CCATAACGCACAAGGAGATGACGTGACCGTCG 3563 29 96.6 32 .............C............... GACGTCTTGCCGACACCGATGGGCCCGTGGAT 3502 29 100.0 32 ............................. GTCTACAAGGTCCGCAACGGCAAGCAGACGAA 3441 29 100.0 32 ............................. CGGGCGAAGAGCGCGTCGAGGGCGATGCGGAT 3380 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Left flank : CCTTGCTGCCACGCATCGTCGCCGACATCCAGGACCTTCTCGACCCTGGCACCGAGCACGCGGTTCCGGACGTCGAGGAACAGCTCGTCGACCTCTGGGACCCGGTCACCGGACCCGTGCGAGGCGGTGCGAACCACGCCTCCACCAGCACGACCCCGGGGTGATCCGACATGCCTTCGATGGTCGTGCTCTGTACTACCGCCGTTCCCCCTCACCTGAGAGGAGCACTCAGCCGCTGGCTGTTGGAGGTCACACCCGAGCTCTACGTCGGCACCGTCTCCGCCCGCGTCCGAGACGAGCTCTGGACCGCCGTGGTTGCGGCTGCCCAGGAAGGCTCGGCCACTCTTGCGTATCCGAGCGACAATGAGCAGGGCTTCGAGCTGAGGACCACTGGACGCCAGCGCCGGAGACCTGTGGATTTCGATGGGCTTACGCTGATCGCCTTCCAGCACGACAGCAAAGAAACAGCAAAGCCCCTATAAGACTGCAGGTCAGCAAGG # Right flank : ACCAGTGTCAGTACGTCCGGTCGGTCTCGGCGTCATCCAGGCAGGTCCCGCGGAGATCTGTCGGGTGCCGGTCGGCGTGCGGGGTGGTTACGCGGGCCCGCCGGTGACGCCGACTAGGGGTCCGGGGTCAGTCGGGTCGTGTCGAACTCCGCCCAGATGGTCTTGCCCTCGGCGTGCCGATCGGCTCCCCAGCGGTCGGACGTCTGCTGGACGATGAGCAGGCCGTGGCCGCCGGGCACGGACGGCTGGTGGGGCAGGCGTGGCCTGGGCAGGGTGGGGTCGCCGTCGCTCACCTCGACGCGCAGGCGGGCCTCGGAGGCGTCCAGGACCAGCGCCAGGGGGCCGCCGCCGTGCAGTACGGCGTTGGCCACGAGCTCCGCCACGAGCAGGACGACGTCGTGCGCGGCGTCGTGGTCCACGCCCGGCGACGTCGTGGACCACCTCCAGTCCTCCAGCGCCCGCACGGTGAACGACCGGGCGCGGGACACCGGTTGGGAGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Alternate repeat : GTCCTCTCCGCGCCAGCGGAGGTGTCCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13641-14180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAUY010000050.1 Streptomyces sp. SMC 277 50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================== ================== 13641 29 72.4 178 C..C......A....C..A.C...CA... CCGACGACGCAGTCGGAGCTCAGGCTCTTCTTTTGCCCCAGCAGGCGTCCACCGGCGAGTCCTCCGGAGCGGTACGGTGGCTCACCTCCGACCGCTGTTCCATGCACATTGCGAGGTTGCGTTGAACCTGCACAGCAAAGCAATGGCAAAGGGGTCGTAGCGTTGCAGGTCAGAAAGG 13848 29 100.0 32 ............................. GCAGAGTGCACGCCGCCGTCTTCGTCGACGTA 13909 29 100.0 32 ............................. GATCAGGTGGTGGCGGGTCCAGCTGTGCCCGG 13970 29 100.0 32 ............................. CAGTGCTTGAAGTGGCGACCGTGGGAGTGGGT 14031 29 100.0 32 ............................. CGGTCCCAGTAGCCTCTGCGAGCCTCCGCCTG 14092 28 96.6 32 ................-............ TTCCGCACCGATGCCTCCGCATGGCTGAGCGC 14152 29 86.2 0 ........T.......T......A..T.. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================== ================== 7 29 93.6 56 GTCTTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCGGGCGCAAACCCGTACAACGGGTCACCACACAACAGCTCGAATGCTTCACCGACCTGCGCCTGGAACGGCGGGCTGATCTTCCCCAGGTCATGCAAACCGGCCCAGAACGAGACCACCGCACGCGCCTCATCCCCAGGCAGACCCAAGGCCCGACCGATACGGACGCGTAACTGCTCTCCCAGCACCACGTCCCACAGCACCTGACACGCAGCGGCCGCATCCAGCAGATGACACATCACCGGATACCGCCGAGACAGCCCCCGCGCCTTCCCCCACAAACGACCATCAGGACGAGACGGACCGACTACGCTGTGCTCTCGCTGCGCCATGCGACAGACTTAGCAGCCACCACTGACAACGCACCCACGATCGGCAAGGCACCACAGCCAACAGCGCATTAGAACAACGGCGAAGGGCTCTAAAGCCCGAGGTCACGAAGGATCCTCACCGTGACCGAAGGTGCGCCGCCAACTCGCGGTGACACCCCGCCACCGCTG # Right flank : GGAGTCAACCCGGAGCCCCAGGAGCCGTTCCGGCGGCTCCTGCGCGCCGAGTGGTTCCGTAGGTTCAGTCGACCCGCCGAGTGCACGGACGGTCTACGAACGGCCGACTGGAGGGTACTTGGGACTCAAAGGCGGCGGGTAGGGCTGGATGCGCCCGTCGAGGCGATAGAGGGAGCTCTCATGCCCAGCGCGTCCCTTTCAGGAGACGCCGAGTCCGAACGACCGTCGGCCCTCTGGACTCGAACGGAGCCCCGGCCGACAGGGGGAACTGGTCGGCCGGGGCGGCGGTCCGGGTTCAGGCCGGCGTGTGCTCCCGGTCCTGCGAGCCGCCCCCGCGGCACGCGAGACAGGCTCGCTGTAGACCACGCGGCGCGCGCCGTCGACCACGACGACCCGGCGTACGCCGCGGCACGCCGCGCAGCCGCCGGCCGGAGTCGACCGGTTGGGCCGCGTGAAGCGGCCCCTACGGCGGAGCTGCGTGAGGTGGTCGATCAGGTCGC # Questionable array : NO Score: 3.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-2.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16564-16965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAUY010000050.1 Streptomyces sp. SMC 277 50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================= ================== 16564 28 86.2 161 .......T..............-A..T.. TCGTCGCGCTGGTCTTCTGCCTAGAAGGCGTGGGCTAGGGGTCCTGCGCAAGCGGTACGGTGGTTCACCCCCGGCAGCTGTTCCACCCACATTGTGAGGTTGCGTTGAACCTGCACAGCAAAGCAATGGCAAAGGGGCCGTAGCGTTGCAGGCCAGAAAGG C [16589] 16754 29 100.0 32 ............................. CACCCCGGCTTGGCGGTGGCCCGATGCCCCAG 16815 29 100.0 32 ............................. ACGGGCGGTGCGGGGCGGCGTGGCGGGCTCGT 16876 29 100.0 32 ............................. CTGCGTGAAGTTCGGCGTGAAGCGGTGCGTGA 16937 29 89.7 0 ........................G.TA. | ========== ====== ====== ====== ============================= ================================================================================================================================================================= ================== 5 29 95.2 64 GTCTTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCTGCGTGAACGCGGCCTACGTGCAACACAGGGCCTTCGACCGGTCGGTGCAGGAGCTGCGGGACATGGGCGTACGTGTGCTGTACGGCGAGGGTGGCTTCATGCCCAATCAGCCGGGGCAGGGCCGCCCGGAGGTGTACCCATGGCGATTGGCCCTGGACACCGTCGACAACCTGGCCCCTGCCGGCGGGGCTTAGACGCGCGACACCGCCCCCTCCGGCCCGGCCCCGCAGTCCGGGGGCAGTGTCGTTCAAGAGGTGCCGTACTACTGGCTCGCCGCCCGGTGTTGATGATGCTCGTCGACTGGCTGGCCAGATTGATCGGCGCGGGCAGAGACGTCTGCCCGGTCGAAAGGTGCTGAACCGCAGGGGGGGTGGGGCAGGCCAGCGTTGACCAAGACGCCAGCGCCGGTGGACTTCAGCGTCAGCTCGCTGGTCGACCAGCTGCCGTTCAGCAAGAGGCGACGAAGCACACGCCCGGAGCCGCCGTGAAGACATCGT # Right flank : GACCTGCGGCTGCGAGGACTGCCCCGCAGGAGGCCTCTCTACGCGAGCGGCGCCCACTGTGCTTGGCCGGTGTGCTCTCCGCGACGGAGCCGGACGGGGCGCGGCCACACTCTCCGGGACGGGAGGGAAGTGTGGTGGTGGGCAACATGTGCGGTTGGACTGGGCGTTTCTATGGTGTGGCGACATCGAACAGTCCGCGCAACCCGTCCGGAAGTGGTACTCATGGCCGCCTCTGCCGCACCCGCACCGATGCCCGGAAGCATCAGGAGGGTCGTCGCCGCCAGTCTCGTCGGGACGACCGTCGAGTGGTACGACAACTCACCCTGCCAGGACCATGACCTGCGATTTCACCACCGCGACCGCTGGCCGGCCAGCACGGAACCAGCACGGGATCCTCCCGCCACCCGCCGGCGACCTGCGTGTCAGCCGACTCATGGAGCGGGTGATGCCGTCCAGGCCATCCCCGTTCACTGAGCATGGTTGACGACTGCGCCACGCCG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //