Array 1 7949-5401 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCV01000004.1 Listeria monocytogenes strain ICDC_LM0106 LM0106Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7948 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7882 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7816 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7750 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7684 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7618 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7552 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7486 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7419 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7353 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7287 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7221 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7155 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7089 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7023 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6957 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6891 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6825 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6759 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6693 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6627 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6561 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6495 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6429 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6363 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6297 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6231 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6165 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6099 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6033 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5967 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5901 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5835 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5769 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5703 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5637 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5571 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5505 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5439 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5404,5407,5412] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //