Array 1 454628-456452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT700189.1 Parabacteroides massiliensis strain SN4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 454628 37 100.0 36 ..................................... TTCTCTGTATCACACATCCGTAATCTTTTAAAGCAA 454701 37 100.0 39 ..................................... ACTATCGAACATTACTATACGCCTCACGGCGGTTTTGCG 454777 37 100.0 36 ..................................... GGCGTCTGCTTTGCTATCCTTATATACCTTAGAATA 454850 37 100.0 39 ..................................... CGTCGGTAATGTCTGGCGTAATTGGTCTAAGTCTTTTTT 454926 37 100.0 39 ..................................... CAGGCAATGTTCTAATGATAACCTGTAAGTCTTTGAATA 455002 37 100.0 39 ..................................... TCATAATTCGAACCTGCCCAACCGTTTTGCGTGTAAAAA 455078 37 100.0 39 ..................................... CGCCGACATTCGACAACGGTCTGTCTGCTTTGTTCAATA 455154 37 100.0 38 ..................................... TAAAAACTCATGAAAAAGAATGTCACATTTCATAATTT 455229 37 100.0 38 ..................................... ATCCTTTCCTTTTTATCATTAATACTATAGAAACTATA 455304 37 100.0 37 ..................................... TACGAGGTGGCGCGCGCTATATTGTTATTAGATTATC 455378 37 100.0 37 ..................................... TCTTTAAATAAGTTTATAGATTCTTCTTAAAATATTA 455452 37 100.0 38 ..................................... CCAGTAGCCATCAGCCCAAACGGTAACCTCTTTAAGGC 455527 37 100.0 34 ..................................... TTCGCTTCCTTCGCTTTCAGACACGTCTTGATCG 455598 37 100.0 37 ..................................... TTTTCATTCAGAAAAAGTTTAATTAAACGAAATAGCC 455672 37 100.0 38 ..................................... AAAAGGGTGATCCTTATTTGGAACGAGCAGGACAAGGT 455747 37 100.0 35 ..................................... TAGAAGCATTAGCCTTTATGGCTTCACTTTGCAAC 455819 37 100.0 38 ..................................... ACAGCATGATATCGTTCATCCGAAGAGCAGTATATATC 455894 37 100.0 38 ..................................... TGGTCCGAGCTTGCTTCGAGTGTCAAAAATATATTTCT 455969 37 100.0 36 ..................................... AATTACGGCTAAGAGTCGTGACAGCCATTTTTGTAC 456042 37 100.0 39 ..................................... GCTACCAATTGTTTTTTATCTTTGGCAACACCTGATACC 456118 37 97.3 38 ............................A........ TTCACCTCAAATTCAAAATCACTAATTTTTCCCGTGTG 456193 37 100.0 37 ..................................... ATTTTCCCGTTCAAAAATAAGGACATAGAGCTTTCCG 456267 37 100.0 39 ..................................... ATCACCAACAATGATGCAATGGGTGTAGTCACTCAAATT 456343 37 100.0 36 ..................................... TGCGTCAAATTCCACCTATATTACCATCAGACCAAA 456416 37 89.2 0 ....................G............GT.G | ========== ====== ====== ====== ===================================== ======================================= ================== 25 37 99.5 38 CTCGTATATAGTATTCCAGTATAATAAGGATTAAGAC # Left flank : AATAAACAGGCCGTCTTCTAATATGTTGTTTTTTGTTATGTATGATATAGAAAGTAATAAGGTTCGTCATCAGGTTGTCAAATACTTGCAACGGAAAGGATGCATGCGTGTCCAGCGGTCAATTTTTTTGGCAGATTTGGCGATGTCGGAATATGATTGCATACGGAAAGACTTGGCGGAGGTGCAGGCGGCTTATGAAAATAATGATAGCATATTGATTGTTCCGATATCGTCGGATTATTTACGTTCAATGAAGATAATTGGCCAAAAAATAGAATTAGATATAATCATGCACAATAAAAATACTTTGTTTTTTTGAAAGAGCCGTTTATGGCATGCATTGTTTTTCAATACAAAATGTAATGAAAGTTCTTTGACATATTGAATTTATGATTATCTTTGCACTCTCAAAATTTAGAGCTATTTTTTGTGAAAATATAAAAAAATCTTAGGTTTTAGAGTGAGAAGTGAATGAATGATAGTGCGTTGGTAATTTTGCT # Right flank : GGAGAATGGAAGAAATGGCTTTTCTGTCACTTTTATGATTGATTTGCATTAAAAAGTTTGTTTTCCGATTGGGAAACTTTATTTTTGTGGAAATCTAAAAAAAATCTATGTTTGGGAAAATCGAATCTGTTCAAATTCCATTTCATTTCGTGTTATGTTATAAGAGTAATTATTGTCAGGCTGATAGGTGTTTGTGTTATCAGGTTATTGATTATGTGTCGGAAAAGTGGCATATAGTAAATATTGTTAATCCGTCTTCATTCATTTTGATGGAGAGTGTGAATTATTCAAGACTTGTAATTTGATAAAATATGTTTATGGGTATGACGGAGGTTTTTAATCGTGTACAAATGAGAATCCTGGCTGAGTGGTTGCAATAAATAAAAAATAATAATAGAGAGATGAAAAAGATAAAGATTTTGTGTGTTCGCTTCCAAAATGAGTTACGGCCTGACGAAATCGAGATGTTCCGTGGAGCCGTGTTAAGTAAACTACAACAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTATATAGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 413117-414396 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT700191.1 Parabacteroides massiliensis strain SN4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 413117 32 100.0 33 ................................ ATGGTGGTTTAAATGACGAACCTGTAGAGGTAA 413182 32 100.0 33 ................................ TAAAAAGTCTTTGACCTTAAAGACAAACCGTGG 413247 32 100.0 35 ................................ CTCCTGTCGCGAATGAAGTCCCCGTATAGCCTTGT 413314 32 100.0 33 ................................ TTGCCATTTATTATCATATACCACTCCTTTCGA 413379 32 100.0 34 ................................ TTTGTTAAAAGTCAAATCCTGCAATTCCATATCA 413445 32 100.0 34 ................................ CTGCCGTGCTAATGTGAATGAAGAAACAAGGCAC 413511 32 100.0 36 ................................ ATTTTGCTGCCAACTCAAAGGACCAGGTAAAGATAT 413579 32 100.0 33 ................................ ATCGTAATAAGTAAAAGAAGTCGTATCAGCCAT 413644 32 100.0 34 ................................ CATTAGACATAAAATTAAAAAAAAACTGCTGTAC 413710 32 100.0 33 ................................ GCCGGTTTGCAGAAAGAGCAGCGCAAGGCGAGT 413775 32 100.0 32 ................................ ATCGAGGCCTGCCATCAGCTGGTCTGTGATCA 413839 32 100.0 33 ................................ TGTTCATTTGGCTAAGATAGTCGTATCGAATTG 413904 32 100.0 34 ................................ CAACTGCCCGATCCACCCGAAATAGTGGCTGTCC 413970 32 100.0 34 ................................ TCAGAGGGCTTCGGCCAATAAGTAATTGAATTGT 414036 32 100.0 33 ................................ AGACGCAGGGACTGAAGGTTTGCAATGCGAGGG 414101 32 100.0 34 ................................ AGCGCGTTGTCGTATAGCGGCAGCACACTAAGTA 414167 32 100.0 34 ................................ CTAACTTGCAGCCGGGGCAAATCCCATCCACACA 414233 32 100.0 34 ................................ CGTTTCGTCCGGCGAATTGTCGAGACCGTTTTCT 414299 32 96.9 34 ........T....................... GTGTCGGGAATCCGGGTGGAGAGCATCGGCAGGC 414365 32 93.8 0 ...................T....G....... | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.5 34 GTCGCATCCTTTACGGATGCGTGGATTGAAAC # Left flank : TCCCCGAGATCCCGTCTTCCCAAAGCCTGCGAGGTCATCCCGCTCGTTCCCATCCGCAAGAAACCGAACAGCCAGTAAATAATATTGAACAACATTCCACCTACCGCAATCGCCCCGATATAGGAAGCGGCACCCAAATGTCCGACAATCGCCACATCGACCAACCCCAACAGAGGAACTGTTATGTTGGAAACAATAGAAGGAAGTGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTAAAAAAACTATTCCTAATTTTGTCGGCAAAGTTACAGATTACTTATAAAATAACATGATTACACTTATGTTTCAATAACAAACAAAAACGCGAACCCTAAGTGATTGTAAAAAACGTTGGATGTTCGCATTCCCTATAAATCATACATTTACAGATTTATTTAGAGAATATGAACATTTATCATTTTTCTACTTTATCATTCGCAAAATTATAAGTTAAAAGTGTTATCAATAAAGCTTTTCATAAACATGGA # Right flank : CATCTATACGCTTGATCTCTCAAACGGCGCAGGGGGTACGTCCTTTGCGGATATAATTATTATAATACTTTTGTAAGAAGATTGATTAGAATATTTGTTTGTTAAAGAATAAAATATATCTTTGTGGATAGGAGTTATAAAGAGACCTTATAACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGGTATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCTTCTGCTGCCCGAGCCATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATGTTACCCGAATAGAAGTCTTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGGTTGGAAGTTTAATGAGTCCCCGTTCATCCGGGTTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGCTACTAAAAAATG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTACGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 418897-419123 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT700191.1 Parabacteroides massiliensis strain SN4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 418897 32 100.0 33 ................................ CACAGTGGGACTTTCTGCATCTTTATCGTCCTC 418962 32 100.0 33 ................................ TATATCGGCTTTAGTATTATCCGGTTATCAGGA 419027 32 100.0 33 ................................ ATCAGCCCGTGCTCGCCGTACTTCGCGTTCAGC 419092 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ================================= ================== 4 32 96.1 33 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTTATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATTGGATATCATCGATCATAAAAAAGATAGTATCCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGCGTCGTCACATCCTATAATGTAGAAGACGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAGCAAAAAGCTGAAGGTTTCGCAATCATTGATTATTAACCTATTAAACACACCTATTAGTTTTATTTCATCAATAAAGAATCCAAAAAGTTTATTATCGCATAAAGGCATTGATAACAGACTGTAAATGTTAGCATTATTTGCAATGCA # Right flank : AGAAGTTGATACACGTGTCATAGCCGTCGCATCCTTTACGGGTGCGACGGTAGTGTTATTGTTGCAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCGCACCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCTCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACTCTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGACACACTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCTTCCAGTAAGGTTGCGCCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATCAGCCTTATCAAAGGTGTTACAA # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1272374-1271945 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT700191.1 Parabacteroides massiliensis strain SN4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1272373 47 100.0 29 ............................................... GCATCCCTGTCACGGATCGTATTGGCGGT 1272297 47 100.0 30 ............................................... GACAGCGGTCGCGATGTGCCCCCTGAATTA 1272220 47 100.0 29 ............................................... ACGTTCATCGCGATGCTGCTGTCTTTAAA 1272144 47 100.0 29 ............................................... TGATCACGATGTTGCCACGCTGGCGGGTA 1272068 47 100.0 30 ............................................... GTTTGAAGCTGGCCACCGGTGCACCGCTTG 1271991 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GTTGTTTCTAATAGTTCAAAGATACAAAAATGAAAGCAAATCACAAC # Left flank : CTTCTCTATATAAATGTTTTAGTGGTGAATTACGTAGAATTTCCTATCCTGAAATGTAATATGGATAGGTTTAGCGAATATCGTATTATGTGGGTACTTGTACTATTTGATTTGCCTACTGAAACAAAGAAGGATAAGAAAATGTATGCTGATTTCAGAAAGAATTTGCAAAAAGATGGATTTACAATGTTTCAGTTTTCTATCTATGTCCGTCATTGTGGCAGTAGTGAGAATGCGGCAGTGCATATAAAAAGAGTTAAATCTTTTCTTCCTGAGTATGGAAATGTAGGCATCATGTGTATCACAGATAAGCAATTTGGGAATATTGAGCTTTTCTACGGTAAAAAGAGTAAAGAAGTAAATGCCCCAGGACAACAATTGGAACTATTCTAAAAAGGAAAATCCTACAAAACAGTAGGATTTTCCTTTTAAACAACAATTATTTTTTTATTCTAACTTAGTGTTTAAATCCTTGATTAATAGCAAACAATGTAAATTCA # Right flank : ATGCTGATCAGTTTATGCCTTTGCCTGATGAACAATCAAGGACCATTACATTGGCACAGTTTTCTGCCATTGGAAATACTATCTAATTTTGAGGTTATACGTGTGGTTGAAGAATCGTCCCTTATCCGTATTTACCTTGACGAATCATTCAAGGCAGAAGGTATCCGCTACTCAAAGGAGTTTTTGCGGCTCATAACCAGGCGTTGTTTCTCAAATGCCATACAGACAATCGATAGCTTTCACATACAGAAACTTGCTTGTGATGCTTTGCAGGAAATGCGCATCATCCATAGATGGAATACCACATATGTAGAAACAATAGCGAAAAAAAACGGGGGATCAAGGCGTCCCTTGATTTATATACCCGTACAAAACTCTGTAGTAAAAGTTTTGTTTTCTGTTAAGGTTTTGGCTCTTCCATAGTTAAGGGTGGAGGGCATATAGATGAACTTTAAGCCTCCACAACTTTTTTTCGATACAAAGGAACATATTATATCACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTCTAATAGTTCAAAGATACAAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //